Browse Element(s) Details


Os.8707.1.S1_at

Description gb:AK070337.1
DB_XREF= gi:32980361
TID=Os.8707.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047K16, full insert sequence.
FL= gb:AK108050.1 gb:AK070337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6273011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8707.1.S1_at--546--8071Chr03:35441841..35441865 (25 bp)
GGAGCAGCTGTGCTTGTCTCTCGAA
LOC_Os03g62730
Os.8707.1.S1_at--102--3071Chr03:35441878..35441902 (25 bp)
AATCTTCAGCTGTCTAGCGCATTGT
LOC_Os03g62730
Os.8707.1.S1_at--46--9991Chr03:35441892..35441997 (25 bp)
TAGCGCATTGTTCAAGTGGTCCTTG
LOC_Os03g62730
Os.8707.1.S1_at--532--2651Chr03:35442077..35442101 (25 bp)
AAGCCAGTTGGGTTACGCAGAGTAC
LOC_Os03g62730
Os.8707.1.S1_at--1089--3071Chr03:35442106..35442130 (25 bp)
AATCACCTCTCAATCCTGAGTCTTG
LOC_Os03g62730
Os.8707.1.S1_at--847--6091Chr03:35442123..35442147 (25 bp)
GAGTCTTGGCTTTTGATATGCTGAG
LOC_Os03g62730
Os.8707.1.S1_at--622--9891Chr03:35442166..35442190 (25 bp)
TACTATCCTTTAACCTTGTCCGAAG
LOC_Os03g62730
Os.8707.1.S1_at--374--2072Chr03:35442201..35442225 (25 bp)
ACTTGCAATTTGTTTTCAGCTGGTG
LOC_Os03g62730
Os.8707.1.S1_at--185--5191Chr03:35442228..35442252 (25 bp)
GCAATCTTCCCATGGGTGTTTGTTT
LOC_Os03g62730
Os.8707.1.S1_at--1153--691Chr03:35442307..35442331 (25 bp)
ATGAGTCATCGTTGTTCTCCAGTTG
LOC_Os03g62730
Os.8707.1.S1_at--670--10871Chr03:35442329..35442353 (25 bp)
TTGGCATGGGCCTTCATGGTTGTAA
LOC_Os03g62730
Target Sequence 
GGAGCAGCTGTGCTTGTCTCTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGGTCCTTGGAGA
TTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGGTATATCAAGGCGGGCATATTGATGGAAGATCTGAGAAGCC
AGTTGGGTTACGCAGAGTACCAGCAATCACCTCTCAATCCTGAGTCTTGGCTTTTGATATGCTGAGATCTGCAGTTAATT
GCTTTACTATCCTTTAACCTTGTCCGAAGTTGGTTGCGAACTTGCAATTTGTTTTCAGCTGGTGCTGCAATCTTCCCATG
GGTGTTTGTTTTGGAAGCAAATGGTTGTTGGTGGTCAGTAGATAGAAGTTAGTTAGTCCTTCAAAATGAGTCATCGTTGT
TCTCCAGTTGGCATGGGCCTTCATGGTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis