Browse Element(s) Details


Os.47354.1.A1_at

Description gb:AK063695.1
DB_XREF= gi:32973713
TID=Os.47354.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G01, full insert sequence.
FL= gb:AK063695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0236011/113' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g627201/113' exoribonuclease family, domain 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02360Os.47354.1.A1_at11/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360OsAffx.9177.1.S1_x_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360Os.40400.1.S1_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47354.1.A1_at--529--8053Chr08:1630870..1630965 (25 bp)
GGAGATCACTCAGCTAACACTTACT
NONE
Os.47354.1.A1_at--799--7492Chr03:35436197..35436217 (21 bp)
GTGGTCTGATGGCAAAATCACCAAT
LOC_Os03g62720
Os.47354.1.A1_at--659--391Chr08:929997..930101 (25 bp)
ATCACCAATGCGGTAGAGCTCTGCA
LOC_Os08g02360
Os.47354.1.A1_at--353--9931Chr08:929942..929966 (25 bp)
TACGGGAGCGCTTGAAAGATGCTGC
LOC_Os08g02360
Os.47354.1.A1_at--630--10331Chr08:929893..929917 (25 bp)
TTTAGCAGCGAGATGTCCAAGACTT
LOC_Os08g02360
Os.47354.1.A1_at--808--9771Chr08:929822..929846 (25 bp)
TAAGGCCTGATGTTTGCGAGATTAC
LOC_Os08g02360
Os.47354.1.A1_at--659--6551Chr08:929795..929819 (25 bp)
GATTATGCTGATTGTTTACTTCATG
LOC_Os08g02360
Os.47354.1.A1_at--434--9891Chr08:929779..929803 (25 bp)
TACTTCATGGCAAAGCAGCTAATTG
LOC_Os08g02360
Os.47354.1.A1_at--1040--4271Chr08:929713..929737 (25 bp)
CCTGACCTTCAGACTTGTAAACATT
LOC_Os08g02360
Os.47354.1.A1_at--750--7991Chr08:929687..929711 (25 bp)
GGATGATGCATTGACGCGGCACTCC
LOC_Os08g02360
Os.47354.1.A1_at--601--1991Chr08:929667..929691 (25 bp)
ACTCCTGTCGTTATTCGTTTCATGT
LOC_Os08g02360
Target Sequence 
GGAGATCACTCAGCTAACACTTACTGGAGAGTGGTCTGATGGCAAAATCACCAATGCGGTAGAGCTCTGCATGGATGCTT
GTAGTAAGCTCTGTGACATACTACGGGAGCGCTTGAAAGATGCTGCCAGCTNGGCTGAGTGAATAATTGCTTTAGCAGCG
AGATGTCCAAGACTTAAANCATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGAGGCTAAGGCCTGATGTTTGCGA
GATTACATGATTATGCTGATTGTTTACTTCATGGCAAAGCAGCTAATTGTTCTGAGAGAAAGTAGCATGGTTTGTATATT
GTTTTGNACTCCTGACCTTCAGACTTGTAAACATTGGGATGATGCATTGACGCGGCACTCCTGTCGTTATTCGTTTCATG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47354.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis