Browse Element(s) Details


OsAffx.16790.1.S1_s_at

Description tigr:9636.m00140
TID=OsAffx.16790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S15, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0240011/1140S ribosomal protein S13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02360Os.47354.1.A1_at11/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360OsAffx.9177.1.S1_x_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360Os.40400.1.S1_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006412biological_processprotein biosynthesis
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16790.1.S1_s_at--817--891Chr08:951664..951788 (25 bp)
AGGCCCATGGTCTTGCGCCGGAGAT
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--1137--3191Chr08:951567..951591 (25 bp)
CAAGGACTCCAAGTTTAGGCTCATC
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--602--1211Chr08:951556..951580 (25 bp)
AGTTTAGGCTCATCCTTGTTGAGAG
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--1030--3771Chr08:950248..950272 (25 bp)
CTCTGGTGGCCTAGAGAGAGAGCTC
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--78--3231Chr08:950197..950221 (25 bp)
CAAGCTTAGCTTGTTCTAGGAATGG
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--929--9991Chr08:950160..950184 (25 bp)
TAGCGCATTATGAGTCTTGAGACAA
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--993--2711Chr08:950137..950161 (25 bp)
AAGCAGGAGCTGCTAATTTTCCTTT
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--525--171Chr08:950122..950146 (25 bp)
ATTTTCCTTTGTCTGGAGAATGCCA
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--864--8031Chr08:950108..950132 (25 bp)
GGAGAATGCCATAAAACCCTTATGC
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--804--2611Chr08:950094..950118 (25 bp)
AACCCTTATGCATTCAATATTCTGA
LOC_Os08g02400
OsAffx.16790.1.S1_s_at--693--9831Chr08:950065..950089 (25 bp)
TAAACTTCTAGTAATGTGCATCGAG
LOC_Os08g02400
Target Sequence 
AGGCCCATGGTCTTGCGCCGGAGATCCCGGAGGACCTGTACTTCCTGATCAAGAAGGCTGTTGCTATTAGGAAGCATTTG
GAGAGGAACAGGAAGGACAAGGACTCCAAGTTTAGGCTCATCCTTGTTGAGAGCAGGATCCACCGCCTCGCTCGCTACTA
CAAGCGCACCAAGAAGCTCCCGCCCACCTGGAAGTATGAGTCGACCACAGCCAGCACTCTGGTGGCCTAGAGAGAGAGCT
CTGCTTCTGCTGTGCTCCTTGCTGCTTCAAGCTTAGCTTGTTCTAGGAATGGATTTTATTTATGTAGCGCATTATGAGTC
TTGAGACAAGCAGGAGCTGCTAATTTTCCTTTGTCTGGAGAATGCCATAAAACCCTTATGCATTCAATATTCTGAACGTT
AAACTTCTAGTAATGTGCATCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16790.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis