Browse Element(s) Details


Os.20190.1.S1_at

Description gb:AK100680.1
DB_XREF= gi:32985889
TID=Os.20190.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113J17, full insert sequence.
FL= gb:AK100680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1114011/11RhoGAP domain containing protein, expressed
LOC_Os08g023501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed
LOC_Os03g11120Os.21849.1.S1_at11/113+5700219..5707714Methionyl-tRNA synthetase, putative, expressed
LOC_Os03g11130OsAffx.22433.3.S1_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11130OsAffx.22433.3.S1_s_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed
LOC_Os03g11150OsAffx.3197.1.S1_at11/113+5726096..5727420hypothetical protein
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005100molecular_functionRho GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20190.1.S1_at--61--7292Chr03:5724706..5724730 (25 bp)
GTGCCATTTGCATTAGCCAAGCTGA
LOC_Os03g11140
Os.20190.1.S1_at--522--3211Chr03:5724723..5724747 (25 bp)
CAAGCTGACAAACCGGCTCAATTTT
LOC_Os03g11140
Os.20190.1.S1_at--496--2031Chr03:5724788..5724812 (25 bp)
ACTTAAATTTGGCTCGCCCACCAGG
LOC_Os03g11140
Os.20190.1.S1_at--632--851Chr03:5724867..5724891 (25 bp)
ATGGCATCATTCTCAGGCTACGGAT
LOC_Os03g11140
Os.20190.1.S1_at--1047--6231Chr03:5724936..5724960 (25 bp)
GATGGACGCTACACAAGCTATTTCA
LOC_Os03g11140
Os.20190.1.S1_at--254--10211Chr03:5724954..5724978 (25 bp)
TATTTCACATCCTGCTTCTGGAAGA
LOC_Os03g11140
Os.20190.1.S1_at--82--7351Chr03:5724987..5725011 (25 bp)
GTGCAATATTGTAACCTTACCGGAG
LOC_Os03g11140
Os.20190.1.S1_at--401--6151Chr03:5725009..5725033 (25 bp)
GAGGTTACCCAGTCCGAGATGCGTC
LOC_Os03g11140
Os.20190.1.S1_at--799--5071Chr03:5725173..5725197 (25 bp)
GCAGCGACATTGATTTATCCGGGTT
LOC_Os03g11140
Os.20190.1.S1_at--675--551Chr03:5725189..5725213 (25 bp)
ATCCGGGTTGCACCATTTCATGTAG
LOC_Os03g11140
Os.20190.1.S1_at--441--9011Chr03:5725244..5725268 (25 bp)
TGCAATTACCTGCTGCATTCGACGC
LOC_Os03g11140
Target Sequence 
GTGCCATTTGCATTAGCCAAGCTGACAAACCGGCTCAATTTTTTGAAAGAAAGGAGGGCGATTCTTGCAAGTGAGATGCA
AAACTTAAATTTGGCTCGCCCACCAGGGCCTACAGCTCCAGCACCAAAGAAAGACTCCACATGAGAAGTTAGAATTTTAA
CATGGCATCATTCTCAGGCTACGGATATTTGTACTGTCAAGTGTCAAATGTGAGCGATGCACATATATATGATGGACGCT
ACACAAGCTATTTCACATCCTGCTTCTGGAAGATGGGGGTGGTGCAATATTGTAACCTTACCGGAGGTTACCCAGTCCGA
GATGCGTCATCATGCAAGAAAATAAGAGGATGCTGGTGGTGTTTACATAAATCGTGGATTGGACAAATATCCATAGTTCT
AGGTAAACGTAATCTGTAAATTTATCAGGTTGTCTTGTTTTTACCNCGATGTTTCATAAGTAATTTTGCAGCGACATTGA
TTTATCCGGGTTGCACCATTTCATGTAGAAAATAGTTAAACCACAGTGCTATTGCAAATGCAATTACCTGCTGCATTCGA
CGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis