Browse Element(s) Details


Os.47373.1.S1_at

Description gb:AK121902.1
DB_XREF= gi:37991525
TID=Os.47373.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105H03, full insert sequence.
FL= gb:AK121902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1111011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed
LOC_Os03g11060Os.11435.1.S1_at11/113+5665732..5666671MFP1 attachment factor 1, putative, expressed
LOC_Os03g11069NANA3+5674771..5675681NA
LOC_Os03g11080OsAffx.25049.1.S1_at10/113+5677479..5678302hypothetical protein
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed
LOC_Os03g11120Os.21849.1.S1_at11/113+5700219..5707714Methionyl-tRNA synthetase, putative, expressed
LOC_Os03g11130OsAffx.22433.3.S1_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11130OsAffx.22433.3.S1_s_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47373.1.S1_at--622--10291Chr03:5689886..5689910 (25 bp)
TTTCCTCGTGCACAGCTGATGAGAT
LOC_Os03g11110
Os.47373.1.S1_at--102--4971Chr03:5689766..5689790 (25 bp)
GCATCCCGTCGAGAATTGTTCACAG
LOC_Os03g11110
Os.47373.1.S1_at--1034--10491Chr03:5689748..5689772 (25 bp)
TTCACAGATCGTCGAACTGGGCCAA
LOC_Os03g11110
Os.47373.1.S1_at--585--2611Chr03:5689725..5689749 (25 bp)
AACGCCATCTTGAGCTCAGGTCAGG
LOC_Os03g11110
Os.47373.1.S1_at--946--8431Chr03:5689643..5689667 (25 bp)
GGCCAGAAGGTCGAGCTAGTCAGAT
LOC_Os03g11110
Os.47373.1.S1_at--341--5691Chr03:5689616..5689640 (25 bp)
GACTTGATTCCAGGCCATATGAGCT
LOC_Os03g11110
Os.47373.1.S1_at--288--3851Chr03:5689593..5689617 (25 bp)
CTGCATGGTGCTGGCTCCTGGAGAA
LOC_Os03g11110
Os.47373.1.S1_at--855--9991Chr03:5689506..5689530 (25 bp)
TAGCTTTGCTGGTGATTGGTGCCAA
LOC_Os03g11110
Os.47373.1.S1_at--541--7791Chr03:5689489..5689513 (25 bp)
GGTGCCAAGTTCGTTTCATGTTAAA
LOC_Os03g11110
Os.47373.1.S1_at--630--1211Chr03:5689432..5689456 (25 bp)
AGTTTTTGGCTGTCAGGCATTCTCT
LOC_Os03g11110
Os.47373.1.S1_at--1023--5431Chr03:5689390..5689414 (25 bp)
GAACCTGAGATTCGTTGCGCTCATT
LOC_Os03g11110
Target Sequence 
TTTCCTCGTGCACAGCTGATGAGATNCAGGGAGCGATCCCGCATCCAGCTCAGAGTGGTATCAAGTTTTCGAGATCGACA
AGCGATGGGTATGAAGCATCAGGAGGCGAGGACAGCGATCGCATCCCGTCGAGAATTGTTCACAGATCGTCGAACTGGGC
CAACGCCATCTTGAGCTCAGGTCAGGGAGGAGGCCCTGCAGCTGATCCCAACATGCCATCATCTGAAGGGTAACTCTACC
ACCGGCCAGAAGGTCGAGCTAGTCAGATATGACTTGATTCCAGGCCATATGAGCTGCATGGTGCTGGCTCCTGGAGAATG
CAGTATACAGCAGAGCAATGATGTTGGCAACACATTGGTGGTTAGTTTAGAGTTTAGGAGTAGCTTTGCTGGTGATTGGT
GCCAAGTTCGTTTCATGTTAAATTAAAGCATGCGAAACTGCAATTCTGTTGCTTAGTTTTTGGCTGTCAGGCATTCTCTT
GTGTCCCNAGCAAATGTGAACCTGAGATTCGTTGCGCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis