Browse Element(s) Details


Os.21849.1.S1_at

Description gb:AK068726.1
DB_XREF= gi:32978743
TID=Os.21849.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160O09, full insert sequence.
FL= gb:AK068726.1 gb:AK059109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1112011/11Methionyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11069NANA3+5674771..5675681NA
LOC_Os03g11080OsAffx.25049.1.S1_at10/113+5677479..5678302hypothetical protein
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed
LOC_Os03g11120Os.21849.1.S1_at11/113+5700219..5707714Methionyl-tRNA synthetase, putative, expressed
LOC_Os03g11130OsAffx.22433.3.S1_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11130OsAffx.22433.3.S1_s_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed
LOC_Os03g11150OsAffx.3197.1.S1_at11/113+5726096..5727420hypothetical protein
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006431biological_processmethionyl-tRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004825molecular_functionmethionine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21849.1.S1_at--785--9851Chr03:5706930..5706954 (25 bp)
TACACAGCTTGGTTTCACAGAAGAC
LOC_Os03g11120
Os.21849.1.S1_at--175--6251Chr03:5707216..5707240 (25 bp)
GATGGAGCCAAAGCCAGTTTTTGCA
LOC_Os03g11120
Os.21849.1.S1_at--161--4871Chr03:5707364..5707388 (25 bp)
GCATAAAACTACCTGCGACCTTGTC
LOC_Os03g11120
Os.21849.1.S1_at--1041--4591Chr03:5707378..5707402 (25 bp)
GCGACCTTGTCGCTTGGTGACAAAG
LOC_Os03g11120
Os.21849.1.S1_at--268--1471Chr03:5707401..5707425 (25 bp)
AGAAGGCCTGAAGCATTTTCTTGGG
LOC_Os03g11120
Os.21849.1.S1_at--709--10391Chr03:5707444..5707468 (25 bp)
TTTTGTTCTAACACTGGCTTTCCAA
LOC_Os03g11120
Os.21849.1.S1_at--1048--8291Chr03:5707459..5707483 (25 bp)
GGCTTTCCAATTCCAAGTAGTACAT
LOC_Os03g11120
Os.21849.1.S1_at--389--6811Chr03:5707524..5707548 (25 bp)
GTTTTATTCCAGTGAACGCAGCTAT
LOC_Os03g11120
Os.21849.1.S1_at--645--5451Chr03:5707537..5707561 (25 bp)
GAACGCAGCTATTGCTTCTGTTTGT
LOC_Os03g11120
Os.21849.1.S1_at--818--6991Chr03:5707623..5707647 (25 bp)
GTACGATTCCTAACATGACATTTAT
LOC_Os03g11120
Os.21849.1.S1_at--1100--2071Chr03:5707640..5707664 (25 bp)
ACATTTATGGAATTGGGAGCACCCT
LOC_Os03g11120
Target Sequence 
TACACAGCTTGGTTTCACAGAAGACCAATTTAGAACATTGAGATGGGAGGATACCAAATGGGGAGGTCTAAAGGCAGGTC
AGGTAATGATGGAGCCAAAGCCAGTTTTTGCAAGGATAGAAACAGAGACGGACGAGAAAGATCAATCAAGTTCGAAGGCA
ACAAAAGGCGGGAAGAAGAAGGCAAGAAGTCAAGGACTTGTGGAAGCATGAGTCAAGTTTGTGATGGTGTACATAGCATA
AAACTACCTGCGACCTTGTCGCTTGGTGACAAAGAAGGCCTGAAGCATTTTCTTGGGGCGAATTGGTTTCTGCAATTTTG
TTCTAACACTGGCTTTCCAATTCCAAGTAGTACATACTGATACTGATAGCTGAGTTAATTCCCCANTCCCGCAATGTTTT
ATTCCAGTGAACGCAGCTATTGCTTCTGTTTGTTATTGGAATAATGGAGCATCCTGANCTCATCCATCTTTATCGAATTT
AGATTAAATCTTTTGTACGATTCCTAACATGACATTTATGGAATTGGGAGCACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis