Browse Element(s) Details


Os.22923.1.S1_at

Description gb:AK059829.1
DB_XREF= gi:32969847
TID=Os.22923.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H12, full insert sequence.
FL= gb:AK059829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1110011/11Got1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed
LOC_Os03g11060Os.11435.1.S1_at11/113+5665732..5666671MFP1 attachment factor 1, putative, expressed
LOC_Os03g11069NANA3+5674771..5675681NA
LOC_Os03g11080OsAffx.25049.1.S1_at10/113+5677479..5678302hypothetical protein
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed
LOC_Os03g11120Os.21849.1.S1_at11/113+5700219..5707714Methionyl-tRNA synthetase, putative, expressed
LOC_Os03g11130OsAffx.22433.3.S1_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11130OsAffx.22433.3.S1_s_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22923.1.S1_at--854--7871Chr03:5688514..5688538 (25 bp)
GGTTTTCTTGCAAAGGATTCCTATT
LOC_Os03g11100
Os.22923.1.S1_at--748--511Chr03:5688670..5688691 (22 bp)
ATCGTTCCTTGACCGCTACAGAGGA
LOC_Os03g11100
Os.22923.1.S1_at--845--2411Chr03:5688691..5688715 (25 bp)
AAAACGGGTTCCAGTGTAGCACAGC
LOC_Os03g11100
Os.22923.1.S1_at--928--6951Chr03:5688706..5688730 (25 bp)
GTAGCACAGCTATGTTTCTTATGAT
LOC_Os03g11100
Os.22923.1.S1_at--989--7491Chr03:5688767..5688791 (25 bp)
GTGGTTCTCCCAATGTGTAATCCTT
LOC_Os03g11100
Os.22923.1.S1_at--631--7431Chr03:5688781..5688805 (25 bp)
GTGTAATCCTTTTTCTCTAAATGTT
LOC_Os03g11100
Os.22923.1.S1_at--535--5231Chr03:5688857..5688881 (25 bp)
GAATCGTTTGGCCAAAGACATGCAA
LOC_Os03g11100
Os.22923.1.S1_at--147--1651Chr03:5688928..5688952 (25 bp)
AGCCCCGCATGTTGGGACAAGGTAG
LOC_Os03g11100
Os.22923.1.S1_at--569--3571Chr03:5688991..5689015 (25 bp)
CATACCCTTTATCGTTTTGTAACAG
LOC_Os03g11100
Os.22923.1.S1_at--616--6511Chr03:5689031..5689055 (25 bp)
GATATAGATATTCCAGCCTTGTCGG
LOC_Os03g11100
Os.22923.1.S1_at--877--631Chr03:5689059..5689083 (25 bp)
ATGCTTGAGCGTATTGTCGCAACTT
LOC_Os03g11100
Target Sequence 
GGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAG
GAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTG
GTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACNNGCTGGTAGGTTTGTTCTTTTGTAAATTACAACCCTGGAC
CTCCNCTGAATCGTTTGGCCAAAGACATGCAAATTCTACAATGAAATGGATTGGATCATTGNAGAAACTTNTGAAGCNAG
CCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTNTACATACCCTTTATCGTTTTG
TAACAGTGCCTGNCAGTNGCAGATATAGATATTCCAGCCTTGTCGGNTTATGCTTGAGCGTATTGTCGCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis