Browse Element(s) Details


OsAffx.25049.1.S1_at

Description tigr:9631.m01022
TID=OsAffx.25049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1108010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11030OsAffx.25048.2.S1_at11/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11030OsAffx.25048.1.S1_at1/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11040OsAffx.25048.1.S1_at11/113+5656906..5659227Cyclin, N-terminal domain containing protein
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed
LOC_Os03g11060Os.11435.1.S1_at11/113+5665732..5666671MFP1 attachment factor 1, putative, expressed
LOC_Os03g11069NANA3+5674771..5675681NA
LOC_Os03g11080OsAffx.25049.1.S1_at10/113+5677479..5678302hypothetical protein
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed
LOC_Os03g11120Os.21849.1.S1_at11/113+5700219..5707714Methionyl-tRNA synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25049.1.S1_at--989--7092Chr03:5677557..5677581 (25 bp)
GTCACTGAGGTGGAGAAAGAACTGA
LOC_Os03g11080
OsAffx.25049.1.S1_at--199--8091Chr03:5677584..5677608 (25 bp)
GGAGCTGCTACCAGGCTACCAGTGT
LOC_Os03g11080
OsAffx.25049.1.S1_at--250--9091Chr03:5677589..5677613 (25 bp)
TGCTACCAGGCTACCAGTGTGCTGC
LOC_Os03g11080
OsAffx.25049.1.S1_at--922--9971Chr03:5677592..5677616 (25 bp)
TACCAGGCTACCAGTGTGCTGCTGC
LOC_Os03g11080
OsAffx.25049.1.S1_at--46--931Chr03:5677596..5677620 (25 bp)
AGGCTACCAGTGTGCTGCTGCCCGG
LOC_Os03g11080
OsAffx.25049.1.S1_at--803--9211Chr03:5677635..5677659 (25 bp)
TCCACGCTGCTTCTCTCTGTAAGGG
LOC_Os03g11080
OsAffx.25049.1.S1_at--552--1831Chr03:5677638..5677662 (25 bp)
ACGCTGCTTCTCTCTGTAAGGGCAA
LOC_Os03g11080
OsAffx.25049.1.S1_at--342--4771Chr03:5677640..5677664 (25 bp)
GCTGCTTCTCTCTGTAAGGGCAACA
LOC_Os03g11080
OsAffx.25049.1.S1_at--351--4911Chr03:5677643..5677667 (25 bp)
GCTTCTCTCTGTAAGGGCAACAGCA
LOC_Os03g11080
OsAffx.25049.1.S1_at--410--3771Chr03:5677649..5677669 (21 bp)
CTCTGTAAGGGCAACAGCAAGTTTA
LOC_Os03g11080
OsAffx.25049.1.S1_at--955--7591NONE
GGGCAACAGCAAGTTTAAAAAGCGT
NONE
Target Sequence 
GTCACTGAGGTGGAGAAAGAACTGAGGGGAGCTGCTACCAGGCTACCAGTGTGCTGCTGCCCGGCCGGCCCTCCCCTCTC
CACGCTGCTTCTCTCTGTAAGGGCAACAGCAAGTTTAAAAAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis