Browse Element(s) Details


OsAffx.25048.1.S1_at

Description tigr:9631.m01018
TID=OsAffx.25048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1104011/11Cyclin, N-terminal domain containing protein
LOC_Os03g110301/11Cyclin, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11010Os.1309.1.S1_at10/113+5634235..5638326Metal transporter Nramp3, putative, expressed
LOC_Os03g11020Os.55183.1.S1_at11/113+5649042..5651084pentatricopeptide, putative, expressed
LOC_Os03g11030OsAffx.25048.2.S1_at11/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11030OsAffx.25048.1.S1_at1/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11040OsAffx.25048.1.S1_at11/113+5656906..5659227Cyclin, N-terminal domain containing protein
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed
LOC_Os03g11060Os.11435.1.S1_at11/113+5665732..5666671MFP1 attachment factor 1, putative, expressed
LOC_Os03g11069NANA3+5674771..5675681NA
LOC_Os03g11080OsAffx.25049.1.S1_at10/113+5677479..5678302hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25048.1.S1_at--169--2311Chr03:5658033..5658057 (25 bp)
AAAGGCTGCAACTTCTTGGTACCTC
LOC_Os03g11040
OsAffx.25048.1.S1_at--775--1751Chr03:5658053..5658075 (23 bp)
ACCTCTGCATTGTTCGTTGCTTCTA
LOC_Os03g11040
OsAffx.25048.1.S1_at--543--1191Chr03:5658172..5658196 (25 bp)
AGTATGAAGACCGTTGCCATCCTAG
LOC_Os03g11040
OsAffx.25048.1.S1_at--702--4431Chr03:5658187..5658211 (25 bp)
GCCATCCTAGTGCAAGATTCTTCAG
LOC_Os03g11040
OsAffx.25048.1.S1_at--674--6711Chr03:5658211..5658235 (25 bp)
GTTCGATTACTGCTGACACTTACAC
LOC_Os03g11040
OsAffx.25048.1.S1_at--1105--6551Chr03:5658583..5658607 (25 bp)
GATTCTTATTTTCTTGTCGTGGAAG
LOC_Os03g11040
OsAffx.25048.1.S1_at--1010--5431Chr03:5658907..5658931 (25 bp)
GAACCTGTCGGTTCAACGCATCACA
LOC_Os03g11040
OsAffx.25048.1.S1_at--257--1851Chr03:5658922..5658946 (25 bp)
ACGCATCACAGGCTACAAGGTCTCT
LOC_Os03g11040
OsAffx.25048.1.S1_at--1105--9212Chr03:5658968..5658992 (25 bp)
TCCATACATGATTTGCAAGCGGGCA
LOC_Os03g11040
OsAffx.25048.1.S1_at--731--7491Chr03:5658997..5659021 (25 bp)
GTGGTCGAACCTTAGAGCCATCAGA
LOC_Os03g11040
OsAffx.25048.1.S1_at--572--7451Chr03:5659156..5659180 (25 bp)
GTGTCGACCATTCCTTCACCAAATA
LOC_Os03g11040
Target Sequence 
AAAGGCTGCAACTTCTTGGTACCTCTGCATTGTTCGTTGCTTCTAAGTATGAAGACCGTTGCCATCCTAGTGCAAGATTC
TTCAGTTCGATTACTGCTGACACTTACACCACACAGCAGGTGGTGGCGATGGAAGCGAACATACTGAGTTTTCTGAACTT
TCAGATGGGGAGTCCCACTGTAATAACTTTCCTACGGAGATTCTTATTTTCTTGTCGTGGAAGCAATAGACCAATAAACA
TAAGACTGGAATTGATGTGTATCTATCTTGCGGAATTGAGCTTGTTAGACGATTACAACATAAGGTTTCTTCCATCGATT
GTTGCTGCTGCCTGCCTGTTTGTTGGCAAGTTCACACTCAACCCGAACACTCGTCCTTGGAACCTGTCGGTTCAACGCAT
CACAGGCTACAAGGTCTCTGATATCGAAGATTGTATTCGTTCCATACATGATTTGCAAGCGGGCAGAAAGTGGTCGAACC
TTAGAGCCATCAGAAGCAAGTACGAGGACGACGCGTTCGAGCGCGTGTCGACCATTCCTTCACCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis