Browse Element(s) Details


Os.55183.1.S1_at

Description gb:AK107638.1
DB_XREF= gi:32992847
TID=Os.55183.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E11, full insert sequence.
FL= gb:AK107638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1102011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10990Os.8953.1.S1_at9/113+5625279..5629327retinoblastoma-binding protein, putative, expressed
LOC_Os03g11010Os.1309.1.S1_at10/113+5634235..5638326Metal transporter Nramp3, putative, expressed
LOC_Os03g11020Os.55183.1.S1_at11/113+5649042..5651084pentatricopeptide, putative, expressed
LOC_Os03g11030OsAffx.25048.2.S1_at11/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11030OsAffx.25048.1.S1_at1/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11040OsAffx.25048.1.S1_at11/113+5656906..5659227Cyclin, N-terminal domain containing protein
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed
LOC_Os03g11060Os.11435.1.S1_at11/113+5665732..5666671MFP1 attachment factor 1, putative, expressed
LOC_Os03g11069NANA3+5674771..5675681NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55183.1.S1_at--765--6211Chr03:5650419..5650443 (25 bp)
GAGGCTGAGAGGTGCTTCCATCAAA
LOC_Os03g11020
Os.55183.1.S1_at--12--8271Chr03:5650456..5650480 (25 bp)
GGCAGAAGCCGAGCAATGTTGCATT
LOC_Os03g11020
Os.55183.1.S1_at--381--2811Chr03:5650491..5650515 (25 bp)
AAGATACTCATGCAGCTTGCCAACC
LOC_Os03g11020
Os.55183.1.S1_at--537--4911Chr03:5650505..5650529 (25 bp)
GCTTGCCAACCGTGAAGAATCTATT
LOC_Os03g11020
Os.55183.1.S1_at--188--2291Chr03:5650546..5650570 (25 bp)
AAATGGCACAGTTTGGACGGTTGGC
LOC_Os03g11020
Os.55183.1.S1_at--648--6651Chr03:5650590..5650614 (25 bp)
GTTGATCATACCTTGCAGAGCACAC
LOC_Os03g11020
Os.55183.1.S1_at--1050--6051Chr03:5650734..5650758 (25 bp)
GAGTTCTGTACTTCGATATGTTGTT
LOC_Os03g11020
Os.55183.1.S1_at--674--5231Chr03:5650914..5650938 (25 bp)
GAATATGTTTCTGCAAGTTCTACTG
LOC_Os03g11020
Os.55183.1.S1_at--564--1951Chr03:5650935..5650959 (25 bp)
ACTGTGGAAGACCATTCTAGCATTG
LOC_Os03g11020
Os.55183.1.S1_at--749--10011Chr03:5650952..5650976 (25 bp)
TAGCATTGCCTTCTGTGCTGAGAGA
LOC_Os03g11020
Os.55183.1.S1_at--505--6791Chr03:5650997..5651021 (25 bp)
GTTATCTGCAAGCTGAATGCCTGGA
LOC_Os03g11020
Target Sequence 
GAGGCTGAGAGGTGCTTCCATCAAATGATTGAGTTAGGGCAGAAGCCGAGCAATGTTGCATTTAGAAGGATAAAGATACT
CATGCAGCTTGCCAACCGTGAAGAATCTATTGCCAGATTAACTGCTCAAATGGCACAGTTTGGACGGTTGGCGCCTGAGG
ATTGCCGAAGAGTTGATCATACCTTGCAGAGCACACATCANAGTAGTGATAGAACTGACACTGACACTATAGTGAAACAC
AGCAACACATTTGAATCACGACGATGATAAATTGGGGAAGATNACTTGGTTGGACAGGGAAATAACTGAAAAAGAGAGTT
CTGTACTTCGATATGTTGTTCNAGGTATGAAGTTCTGCATGTGATCTATAGATGGCCAACCATATTATTTTCAATATCAA
TAGAATATGTTTCTGCAAGTTCTACTGTGGAAGACCATTCTAGCATTGCCTTCTGTGCTGAGAGAAATGCTATTCCAGCA
TCATTGTTATCTGCAAGCTGAATGCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis