Browse Element(s) Details


Os.1309.1.S1_at

Description gb:AK065481.1
DB_XREF= gi:32975499
TID=Os.1309.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1309 (NCBI UniGene Cluster)
UG_TITLE=Integral membrane protein (OsNramp2) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013007J10, full insert sequence.
FL= gb:L81152.1 gb:AK065481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1101010/11Metal transporter Nramp3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein
LOC_Os03g10980OsAffx.12821.1.S1_at11/113+5620408..5622674tetratricopeptide repeat, putative
LOC_Os03g10990Os.8953.1.S1_at9/113+5625279..5629327retinoblastoma-binding protein, putative, expressed
LOC_Os03g11010Os.1309.1.S1_at10/113+5634235..5638326Metal transporter Nramp3, putative, expressed
LOC_Os03g11020Os.55183.1.S1_at11/113+5649042..5651084pentatricopeptide, putative, expressed
LOC_Os03g11030OsAffx.25048.2.S1_at11/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11030OsAffx.25048.1.S1_at1/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11040OsAffx.25048.1.S1_at11/113+5656906..5659227Cyclin, N-terminal domain containing protein
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1309.1.S1_at--965--7251Chr03:5634798..5634822 (25 bp)
GTCCTTCTATGCCACTGAAGTCCGG
LOC_Os03g11010
Os.1309.1.S1_at--575--7831Chr03:5634760..5634784 (25 bp)
GGTCAAGCTTGTGCGTTGTATTGGC
LOC_Os03g11010
Os.1309.1.S1_at--444--1211Chr03:5634735..5634759 (25 bp)
AGTTTACCTTGCATTCATCGTCTAT
LOC_Os03g11010
Os.1309.1.S1_at--71--5951NONE
GAGCACATGAGCGTCCTTCAGAAGT
NONE
Os.1309.1.S1_at--105--1071Chr03:5634618..5634642 (25 bp)
AGGGCAGGACAATTCCCTTATCGGC
LOC_Os03g11010
Os.1309.1.S1_at--1087--4291Chr03:5634603..5634627 (25 bp)
CCTTATCGGCCTTCAGAACTGTTAG
LOC_Os03g11010
Os.1309.1.S1_at--713--5451Chr03:5634588..5634612 (25 bp)
GAACTGTTAGTTTCTACCATGGTGA
LOC_Os03g11010
Os.1309.1.S1_at--403--7051Chr03:5634529..5634553 (25 bp)
GTAAAAACTTGTACTACTGCCTGCT
LOC_Os03g11010
Os.1309.1.S1_at--1103--4451Chr03:5634511..5634535 (25 bp)
GCCTGCTTGTATTAGCTCCAGGAAG
LOC_Os03g11010
Os.1309.1.S1_at--756--2091Chr03:5634430..5634450 (21 bp)
ACATCTGTATATTCCTCTGCTGTTG
LOC_Os03g11010
Os.1309.1.S1_at--904--3171Chr03:5634389..5634413 (25 bp)
AATTGGTTGGGCTTCTCCACTTAGG
LOC_Os03g11010
Target Sequence 
GTCCTTCTATGCCACTGAAGTCCGGGGAGCATTGGTTCGGTCAAGCTTGTGCGTTGTATTGGCAGTTTACCTTGCATTCA
TCGTCTATCTTATCATGCNAAATACCTCACTGTATTCTCGCCTCCGCTCAGCAATGACAAAGAGCACATGAGCGTCCTTC
AGAAGTTTTTTGAACAAAAAAAGGGCAGGACAATTCCCTTATCGGCCTTCAGAACTGTTAGTTTCTACCATGGTGAAGCA
GATCATATTAGAAGAAAGATGCCTCCCCCNATGTAAAAACTTGTACTACTGCCTGCTTGTATTAGCTCCAGGAAGAAGCA
TAGTAAAAAAAGTCTATTTGTATTAGCTCCAGGAAGAAGCCTACCGATGAACTANCNCACATCTGTATATTCCTCTGCTG
TTGTATAAGTGCATTAGCGAATTGGTTGGGCTTCTCCACTTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis