Browse Element(s) Details


OsAffx.12821.1.S1_at

Description tigr:9631.m01012
TID=OsAffx.12821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1098011/11tetratricopeptide repeat, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein
LOC_Os03g10980OsAffx.12821.1.S1_at11/113+5620408..5622674tetratricopeptide repeat, putative
LOC_Os03g10990Os.8953.1.S1_at9/113+5625279..5629327retinoblastoma-binding protein, putative, expressed
LOC_Os03g11010Os.1309.1.S1_at10/113+5634235..5638326Metal transporter Nramp3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12821.1.S1_at--382--4131Chr03:5622062..5622086 (25 bp)
CGCAGGCGTACGACATGAAGGGCAT
LOC_Os03g10980
OsAffx.12821.1.S1_at--755--1371Chr03:5622095..5622119 (25 bp)
AGAGCCTCCTGGACTGCCTGGCCTT
LOC_Os03g10980
OsAffx.12821.1.S1_at--585--8171Chr03:5622185..5622209 (25 bp)
GGAACCCGAAGCTGCCGTACTGCGT
LOC_Os03g10980
OsAffx.12821.1.S1_at--281--9151Chr03:5622205..5622229 (25 bp)
TGCGTCGCGCGGATGATCAGTAAGC
LOC_Os03g10980
OsAffx.12821.1.S1_at--782--1311Chr03:5622230..5622254 (25 bp)
AGATGGGCTTGACAGGTCTCTTCTC
LOC_Os03g10980
OsAffx.12821.1.S1_at--604--5771Chr03:5622264..5622288 (25 bp)
GACGAACAGTAGCACCACCAAGGTA
LOC_Os03g10980
OsAffx.12821.1.S1_at--577--6491Chr03:5622289..5622313 (25 bp)
GATAGAGATGATCGCATGCCGCATT
LOC_Os03g10980
OsAffx.12821.1.S1_at--304--4991Chr03:5622302..5622326 (25 bp)
GCATGCCGCATTACAGCGACGGCGA
LOC_Os03g10980
OsAffx.12821.1.S1_at--145--5271Chr03:5622413..5622436 (24 bp)
GAATGAAGCTTTGTAGGCCAGGTAA
LOC_Os03g10980
OsAffx.12821.1.S1_at--439--2891Chr03:5622579..5622603 (25 bp)
AAGGGTTTACCAATCATCACGGACG
LOC_Os03g10980
OsAffx.12821.1.S1_at--809--391Chr03:5622591..5622615 (25 bp)
ATCATCACGGACGAGGCTTGGAGGA
LOC_Os03g10980
Target Sequence 
CGCAGGCGTACGACATGAAGGGCATGGCCAGGGAGAGCCTCCTGGACTGCCTGGCCTTCGCCGGCGCGTGGCTCAACCGG
AAGGACGGGACGGCGGCGGCCGCGGCGGCGGCGTCGCGCGGCGGGAACCCGAAGCTGCCGTACTGCGTCGCGCGGATGAT
CAGTAAGCAGATGGGCTTGACAGGTCTCTTCTCCGCCGTGGCGACGAACAGTAGCACCACCAAGGTAGATAGAGATGATC
GCATGCCGCATTACAGCGACGGCGACGGCGACGGCGGCGACAGCGACGACGAGGAAGACGACGACGACGACGATCGTGAT
GAAAGCGAGGAGGAGGAATTTGCTGAGAAAGGAATGAAGCTTTGTAGGCCAGGTAAGGGTTTACCAATCATCACGGACGA
GGCTTGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis