Browse Element(s) Details


Os.5990.1.S1_at

Description gb:AK120259.1
DB_XREF= gi:37989882
TID=Os.5990.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046C24, full insert sequence.
FL= gb:AK058359.1 gb:AK120259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1094011/11Casein kinase II, alpha chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein
LOC_Os03g10980OsAffx.12821.1.S1_at11/113+5620408..5622674tetratricopeptide repeat, putative

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Gene Ontology Classification
GO idTypeName
GO:0004680molecular_functioncasein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5990.1.S1_at--792--4431Chr03:5596331..5596355 (25 bp)
GCCTTGGCTGTATGTTTGCTGGAAT
LOC_Os03g10940
Os.5990.1.S1_at--106--4411Chr03:5596155..5596179 (25 bp)
GCCACGATAACCATGACCAGCTTGT
LOC_Os03g10940
Os.5990.1.S1_at--925--331Chr03:5595944..5595968 (25 bp)
ATACAGGATTGCACTTGATCCCCAG
LOC_Os03g10940
Os.5990.1.S1_at--589--551Chr03:5595927..5595951 (25 bp)
ATCCCCAGCTTGAGGCTCTGATTGG
LOC_Os03g10940
Os.5990.1.S1_at--483--2451Chr03:5595757..5595781 (25 bp)
AAAATAGGCATCTTGTCTCTCCAGA
LOC_Os03g10940
Os.5990.1.S1_at--280--6471Chr03:5595616..5595640 (25 bp)
GATAAACTTATTCGCTTCGACCACC
LOC_Os03g10940
Os.5990.1.S1_at--146--2511Chr03:5595374..5595398 (25 bp)
AACATGAACGGAACGCCATCTGCTG
LOC_Os03g10940
Os.5990.1.S1_at--302--6532Chr08:22963901..22964410 (25 bp)
GATTTGCTCCTTTGTTTTATTCTAT
NONE
Os.5990.1.S1_at--2--10211Chr03:5595303..5595327 (25 bp)
TATTCTATTCTACTGAGGCAACGCA
LOC_Os03g10940
Os.5990.1.S1_at--261--1251Chr03:5595276..5595300 (25 bp)
AGTTGTAGCATGTTGCGCCTTAGGT
LOC_Os03g10940
Os.5990.1.S1_at--658--8911Chr03:5595240..5595264 (25 bp)
TGAGCGGTGCCTAACATCCTTAAAT
LOC_Os03g10940
Target Sequence 
GCCTTGGCTGTATGTTTGCTGGAATGATATTTCGCAAGGAACCATTCTTCTATGGCCACGATAACCATGACCAGCTTGTC
AAAATAGCCAAGGTTCTAGGTACAGACCAGCTTAATGCTTACCTGAATAAATACAGGATTGCACTTGATCCCCAGCTTGA
GGCTCTGATTGGGAGGCATACCAGGAAACCTTGGTCTAAGTTTATAAATCCAGAAAATAGGCATCTTGTCTCTCCAGAGG
CTATTGATTTTCTTGATAAACTTATTCGCTTCGACCACCATGACAGGCTGACNGCTCGTGAAGCTATGGCGCATCCCTAC
TTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAACGTAACATGAACGGAACGCCATCTGCTGCTGTTGGATTGC
ACTGGAAATCTGTTGCAGATTTGCTCCTTTGTTTTATTCTATTCTACTGAGGCAACGCAAAAGTTGTAGCATGTTGCGCC
TTAGGTCCGCTTGCTGCTGAGCGGTGCCTAACATCCTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis