Browse Element(s) Details


Os.19285.1.S1_at

Description gb:AK108941.1
DB_XREF= gi:32994150
TID=Os.19285.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B07, full insert sequence.
FL= gb:AK108941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1089011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10840OsAffx.22433.5.S1_s_at11/113+5546863..5549667hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_at5/113+5546863..5549667hypothetical protein
LOC_Os03g10850Os.14106.1.S1_at10/113+5552488..5555549expressed protein
LOC_Os03g10850OsAffx.12815.1.S1_at2/113+5552488..5555549expressed protein
LOC_Os03g10860Os.4660.1.S1_s_at11/113+5561171..5561827expressed protein
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19285.1.S1_at--785--7891Chr03:5574526..5574550 (25 bp)
GGTTCATCTGTGTCAAGGCCATCTA
LOC_Os03g10890
Os.19285.1.S1_at--465--5691Chr03:5574595..5574619 (25 bp)
GACTTCGGGAACAGGGATGCTCCAT
LOC_Os03g10890
Os.19285.1.S1_at--986--2711Chr03:5574623..5574647 (25 bp)
AAGCAAATAGGTCCAGCTCATCATT
LOC_Os03g10890
Os.19285.1.S1_at--719--1471Chr03:5574798..5574822 (25 bp)
AGAATGCTCGATTTGCCTTGATGGA
LOC_Os03g10890
Os.19285.1.S1_at--218--4831Chr03:5574840..5574864 (25 bp)
GCTCATAAAGCTACGTTGTGGGCAC
LOC_Os03g10890
Os.19285.1.S1_at--131--10831Chr03:5574855..5574879 (25 bp)
TTGTGGGCACAGGTTTCACTCGAAT
LOC_Os03g10890
Os.19285.1.S1_at--919--9351Chr03:5574874..5574898 (25 bp)
TCGAATTGCCTGGAGCCATGGGTAC
LOC_Os03g10890
Os.19285.1.S1_at--608--7311Chr03:5574905..5574929 (25 bp)
GTGCTGATTGCCCATATTGTCGAAC
LOC_Os03g10890
Os.19285.1.S1_at--186--5711Chr03:5574950..5574974 (25 bp)
GACTACCTTAGTTCTGCATTGGCAG
LOC_Os03g10890
Os.19285.1.S1_at--253--6871Chr03:5574974..5574998 (25 bp)
GTTTGGCACTCTCATTAGAACTGTA
LOC_Os03g10890
Os.19285.1.S1_at--30--6631Chr03:5575056..5575080 (25 bp)
GTTGGTATGACATCACTCTATTGAA
LOC_Os03g10890
Target Sequence 
GGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAA
CAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTANCGANTCNGATGAAGAAANGGTCA
CCCATTGACACCANTTCCTTAAAAAGATCACGTGGNCTGANCAAGGCGNCCTTCCTTCGGCTACANGATAGAGATTTTTG
AGNCAAGCAAAGATGACAANCAGGGAGGCANTCACCAGAATGCTCGATTTGCCTTGATGGATTCTATGACGGAGATGAGC
TCATAAAGCTACGTTGTGGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCATAT
TGTCGAACAAACATACAGTCACGATCCTGACTACCTTAGTTCTGCATTGGCAGTTTGGCACTCTCATTAGAACTGTAATT
AACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTGCATNCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis