Browse Element(s) Details


OsAffx.22433.5.S1_s_at

Description tigr:9631.m00998
TID=OsAffx.22433.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3107011/11U-box domain containing protein, expressed
LOC_Os03g1084011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22433.5.S1_s_at--882--213Chr03:5548345..5548369 (25 bp)
ATTTGGTGCCCACTTCCAGATTGTC
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--769--4553Chr03:5548352..5548376 (25 bp)
GCCCACTTCCAGATTGTCTCATCTT
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--933--9573Chr03:5548373..5548397 (25 bp)
TCTTCCTCCCCATCTTGAAGTTGCA
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--1139--8092Chr03:5548404..5548428 (25 bp)
GGACCGCGTCCCAAATCTGAAAGTA
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--1019--3033Chr03:5548417..5548441 (25 bp)
AATCTGAAAGTATTCCCCAATTGCG
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--280--8872Chr03:5548461..5548485 (25 bp)
TGATGTCTCGTACCCACCTGTGGTT
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--22--1772Chr03:5548476..5548500 (25 bp)
ACCTGTGGTTCAGAAGCCCTCGTGC
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--866--4532Chr03:5548510..5548534 (25 bp)
GCCCGAGCGCTCGACATGGCTGAAG
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--346--7612Chr03:5548541..5548565 (25 bp)
GGGAATCTCGACTTTATGCTCCCCA
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--961--3273Chr03:5548586..5548610 (25 bp)
CAAAATTTGGTGTTCTTCCCATCAC
LOC_Os03g10840
OsAffx.22433.5.S1_s_at--262--213Chr03:5548590..5548614 (25 bp)
ATTTGGTGTTCTTCCCATCACCCAA
LOC_Os03g10840
Target Sequence 
ATTTGGTGCCCACTTCCAGATTGTCTCATCTTCCTCCCCATCTTGAAGTTGCACCCCCTGGACCGCGTCCCAAATCTGAA
AGTATTCCCCAATTGCGCGATTGGAGGATGCCCCCTTGATGTCTCGTACCCACCTGTGGTTCAGAAGCCCTCGTGCCACC
GTCAAGCCCGAGCGCTCGACATGGCTGAAGTTCAAGGGGAATCTCGACTTTATGCTCCCCACCGGCAACCAGTCCGCCAA
CCAAAATTTGGTGTTCTTCCCATCACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22433.5.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis