Browse Element(s) Details


OsAffx.13139.1.S1_at

Description tigr:9631.m03046
TID=OsAffx.13139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g310447/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31000OsAffx.13138.1.S1_at11/113+17614914..17622407U-box domain containing protein
LOC_Os03g31010Os.6212.1.S1_at6/113+17624130..17628685expressed protein
LOC_Os03g31030NANA3+17629392..17629757hypothetical protein
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13139.1.S1_at--665--4011Chr03:17644264..17644288 (25 bp)
CGTCGAGGTCACCAGTCGTTGTCGC
LOC_Os03g31044
OsAffx.13139.1.S1_at--21--9391Chr03:17644262..17644286 (25 bp)
TCGAGGTCACCAGTCGTTGTCGCCG
LOC_Os03g31044
OsAffx.13139.1.S1_at--674--6151Chr03:17644260..17644284 (25 bp)
GAGGTCACCAGTCGTTGTCGCCGTC
LOC_Os03g31044
OsAffx.13139.1.S1_at--247--4471Chr03:17644055..17644167 (25 bp)
GCCTCCGGCGTGACCGCTGCGGGTG
LOC_Os03g31044
OsAffx.13139.1.S1_at--789--991Chr03:17644012..17644036 (25 bp)
AGGAGGCGAGCTTGGCCCTGCACAC
LOC_Os03g31044
OsAffx.13139.1.S1_at--853--891Chr03:17644009..17644033 (25 bp)
AGGCGAGCTTGGCCCTGCACACCGT
LOC_Os03g31044
OsAffx.13139.1.S1_at--424--2911Chr03:17643890..17643909 (20 bp)
AAGGATAGAGGGACTGACACCCCTA
LOC_Os03g31044
OsAffx.13139.1.S1_at--126--7891NONE
GGATAGAGGGACTGACACCCCTATC
NONE
OsAffx.13139.1.S1_at--866--271NONE
ATAGAGGGACTGACACCCCTATCCA
NONE
OsAffx.13139.1.S1_at--969--9991NONE
TAGAGGGACTGACACCCCTATCCAG
NONE
OsAffx.13139.1.S1_at--880--6131NONE
GAGGGACTGACACCCCTATCCAGCA
NONE
Target Sequence 
CGTCGAGGTCACCAGTCGTTGTCGCCGTCGTCTGCACCGTCGCCAGTCATCGCCATCCACCGCCGTTGTCCCCGAGGTTG
CCGTTGCCGTCGTTTGGATCCGGCTCTGCCCGACCTCCGTTGCCTCCGGCGTGACCGCTGCGGGTGCGGCTCGGGAGGGC
GGTGAGGAGGCGAGCTTGGCCCTGCACACCGTCGCCGTCGTTGAAGCTGGAGGTGGCGGCGGCGTCTCGGCTTCGTCGTG
GTGGTGGCGGCGGCGTCCCCCGGCCTGCGTCGGCCCTGAGAAGGGGAAAAGAAGGATAGAGGGACTGACACCCCTATCCA
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis