Browse Element(s) Details


Os.6212.1.S1_at

Description gb:AK069431.1
DB_XREF= gi:32979455
TID=Os.6212.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019B12, full insert sequence.
FL= gb:AK069431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g310106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30980OsAffx.31069.2.S1_x_at1/113+17598927..17602595hypothetical protein
LOC_Os03g30990OsAffx.20387.1.S1_x_at2/113+17603551..17609415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30990OsAffx.10632.1.S1_at1/113+17603551..17609415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31000OsAffx.13138.1.S1_at11/113+17614914..17622407U-box domain containing protein
LOC_Os03g31010Os.6212.1.S1_at6/113+17624130..17628685expressed protein
LOC_Os03g31030NANA3+17629392..17629757hypothetical protein
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6212.1.S1_at--436--5191Chr03:17627424..17627448 (25 bp)
GCAATGTTTACTGCTGCACAGGCAT
LOC_Os03g31010
Os.6212.1.S1_at--247--9031Chr03:17627438..17627462 (25 bp)
TGCACAGGCATCTTCGAACTCACAG
LOC_Os03g31010
Os.6212.1.S1_at--1105--231Chr03:17627624..17627648 (25 bp)
ATATACCTGGGTCGATGCAATCACA
LOC_Os03g31010
Os.6212.1.S1_at--1143--2111Chr03:17627684..17627708 (25 bp)
ACAGTTTGACTGGTGGGCATCCTCA
LOC_Os03g31010
Os.6212.1.S1_at--149--8011Chr03:17628530..17628554 (25 bp)
GGAGGCGCAAATTCTACCAGCATGA
LOC_Os03g31010
Os.6212.1.S1_at--874--2511Chr03:17628650..17628674 (25 bp)
AACTTTCCCCAGCAGAGGCAGCAAA
LOC_Os03g31010
Os.6212.1.S1_at--97--2231Chr03:17628691..17628715 (25 bp)
ACAAGTAGTGTTTTGCTAGGCCGAG
NONE
Os.6212.1.S1_at--733--10471Chr03:17628733..17628757 (25 bp)
TTAAGTCCATGCATGCCGTCAGCAG
NONE
Os.6212.1.S1_at--605--10671Chr03:17628811..17628835 (25 bp)
TTCCTTGTTACAGGGCATCACCAAT
NONE
Os.6212.1.S1_at--813--10111Chr03:17628893..17628917 (25 bp)
TATGTCTTATGTCTTCATGCGGTCC
NONE
Os.6212.1.S1_at--750--9611Chr03:17628907..17628931 (25 bp)
TCATGCGGTCCTCTATTGATTTAAG
NONE
Target Sequence 
GCAATGTTTACTGCTGCACAGGCATCTTCGAACTCACAGATGATGGCAAATATACCTGGGTCGATGCAATCACAATCACT
TTTGCCACAAATGCAAGGCCTTAATCNGTACAGTTTGACTGGTGGGCATCCTCAAAGGAGCCATCCNATCCCAAATGCTG
ACTGACCAAATGTTTGGTATGGGAGGCGCAAATTCTACCAGCATGATGGGAATGCAGCAGCAGCAGCAATTTAACATGCA
AGCAAATGCTCAGAACCTGCAACAAGGCATGACAGGCCTCCAGAACCAGACACNAAAATCCCAACTTTCCCCAGCAGAGG
CAGCAAAACCAGCAATGATTCAAACAAGTAGTGTTTTGCTAGGCCGAGGAAGAATTTTCCATATNTTAAGTCCATGCATG
CCGTCAGCAGAGGGCAAAACGTCGTGTGGCTGGCCAAATAGCACAGCAGCAACTGCTGCTTTNTTCCTTGTTACAGGGCA
TCACCAATGGACACATTAGTTTGGTGATATCAGCTGGCTGTATCTATCTTATAATGATGGATGCTTATGTCTTATGTCTT
CATGCGGTCCTCTATTGATTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis