Browse Element(s) Details


Os.31614.1.S1_at

Description gb:AK107031.1
DB_XREF= gi:32992240
TID=Os.31614.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B03, full insert sequence.
FL= gb:AK107031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3104411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31000OsAffx.13138.1.S1_at11/113+17614914..17622407U-box domain containing protein
LOC_Os03g31010Os.6212.1.S1_at6/113+17624130..17628685expressed protein
LOC_Os03g31030NANA3+17629392..17629757hypothetical protein
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31614.1.S1_at--1082--7391Chr03:17641897..17641921 (25 bp)
GTGATCGCCTTATTTTCTGATTGGT
LOC_Os03g31044
Os.31614.1.S1_at--378--7891Chr03:17641875..17641899 (25 bp)
GGTTCTTCATACTGTTTTGTTCCAT
LOC_Os03g31044
Os.31614.1.S1_at--558--3591Chr03:17641822..17641846 (25 bp)
CATTTTGGCCTTAAGTCTGCTGTGT
LOC_Os03g31044
Os.31614.1.S1_at--843--10291Chr03:17641771..17641795 (25 bp)
TTTCCTTCAAACCTGTGCATGTCTG
LOC_Os03g31044
Os.31614.1.S1_at--874--4991Chr03:17641755..17641779 (25 bp)
GCATGTCTGATTGTTTTGCCTGAAC
LOC_Os03g31044
Os.31614.1.S1_at--443--2051Chr03:17641704..17641728 (25 bp)
ACTTCATTTTTCTAGCGGTTGACAA
LOC_Os03g31044
Os.31614.1.S1_at--519--5211Chr03:17641620..17641644 (25 bp)
GAATTCTGCTCTCGTTACATATGTC
LOC_Os03g31044
Os.31614.1.S1_at--1108--731Chr03:17641569..17641593 (25 bp)
ATGTTAGCTTGCAGTCATGCCATTT
LOC_Os03g31044
Os.31614.1.S1_at--476--9191Chr03:17641552..17641576 (25 bp)
TGCCATTTCATTTTCCTCAAAGGTG
LOC_Os03g31044
Os.31614.1.S1_at--1072--4511Chr03:17641458..17641482 (25 bp)
GCCCGTTGGGTATATTCACTTTCAG
LOC_Os03g31044
Os.31614.1.S1_at--504--10811Chr03:17641420..17641444 (25 bp)
TTGTAGCCATACCATCTTGATCAGA
LOC_Os03g31044
Target Sequence 
GTGATCGCCTTATTTTCTGATTGGTTCTTCATACTGTTTTGTTCCATGCAGGTGTGCAGTAAAAAGTATTCTTTTCATTT
TGGCCTTAAGTCTGCTGTGTTGAGTAAGAAATCAGAGAAGGAAGGGTTTCCTTCAAACCTGTGCATGTCTGATTGTTTTG
CCTGAACTAGCACAAACTAAACATAGATCCATTACTTCATTTTTCTAGCGGTTGACAACTTCATATGAATTTTGTGCTTC
CTTGATTGGCTTCTTTGGCACCACAATTTTGAATTACGAATTCTGCTCTCGTTACATATGTCTTTTATTTAGTGCTACTA
AGCGTTAAATGTTAGCTTGCAGTCATGCCATTTCATTTTCCTCAAAGGTGTGCTGAAGAGCAGATAAAGTTTTTGAAAGC
AACATTTGACTCTCAATTGATTGCTTTTTTTTTTAGCACGCCCGTTGGGTATATTCACTTTCAGAAGCTTGGTCTATTTG
TAGCCATACCATCTTGATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis