Browse Element(s) Details


OsAffx.13139.1.S1_x_at

Description tigr:9631.m03046
TID=OsAffx.13139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3104410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31000OsAffx.13138.1.S1_at11/113+17614914..17622407U-box domain containing protein
LOC_Os03g31010Os.6212.1.S1_at6/113+17624130..17628685expressed protein
LOC_Os03g31030NANA3+17629392..17629757hypothetical protein
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13139.1.S1_x_at--673--6151Chr03:17644260..17644284 (25 bp)
GAGGTCACCAGTCGTTGTCGCCGTC
LOC_Os03g31044
OsAffx.13139.1.S1_x_at--10--10692Chr04:26218461..26218485 (25 bp)
TTGCCGTTGCCGTCGTTTGGATCCG
NONE
OsAffx.13139.1.S1_x_at--788--991Chr03:17644012..17644036 (25 bp)
AGGAGGCGAGCTTGGCCCTGCACAC
LOC_Os03g31044
OsAffx.13139.1.S1_x_at--1106--1773Chr03:17055268..17055288 (21 bp)
ACCGTCGCCGTCGTTGAAGCTGGAG
NONE
OsAffx.13139.1.S1_x_at--125--7891NONE
GGATAGAGGGACTGACACCCCTATC
NONE
OsAffx.13139.1.S1_x_at--484--10131Chr03:17643107..17643131 (25 bp)
TATCCAGCACGCCAACGGAATTCTC
LOC_Os03g31044
OsAffx.13139.1.S1_x_at--668--4131Chr03:17642981..17643005 (25 bp)
CGCTGCACCACCAGATTATCAAGGT
LOC_Os03g31044
OsAffx.13139.1.S1_x_at--69--2891Chr03:17642781..17642805 (25 bp)
AAGGGACGAGGATTTCCGCTCGCGT
LOC_Os03g31044
OsAffx.13139.1.S1_x_at--731--9891Chr03:17642757..17642781 (25 bp)
TATCGGGAACGATGGCCGCTACTTC
LOC_Os03g31044
OsAffx.13139.1.S1_x_at--288--4851Chr03:17642740..17642764 (25 bp)
GCTACTTCGATCTTGTCGACTTCAG
LOC_Os03g31044
OsAffx.13139.1.S1_x_at--709--10511Chr03:17642720..17642744 (25 bp)
TTCAGCGCAATCGACGTATTCTACG
LOC_Os03g31044
Target Sequence 
GAGGTCACCAGTCGTTGTCGCCGTCGTCTGCACCGTCGCCAGTCATCGCCATCCACCGCCGTTGTCCCCGAGGTTGCCGT
TGCCGTCGTTTGGATCCGGCTCTGCCCGACCTCCGTTGCCTCCGGCGTGACCGCTGCGGGTGCGGCTCGGGAGGGCGGTG
AGGAGGCGAGCTTGGCCCTGCACACCGTCGCCGTCGTTGAAGCTGGAGGTGGCGGCGGCGTCTCGGCTTCGTCGTGGTGG
TGGCGGCGGCGTCCCCCGGCCTGCGTCGGCCCTGAGAAGGGGAAAAGAAGGATAGAGGGACTGACACCCCTATCCAGCAC
GCCAACGGAATTCTCCCCCACCCCACCTCCTCCCGTGCAAAACCTCCACCACCACCGCCACCACCGCCGCGCAAAACCCT
CCATCGCTGCCATGCCGCCGCCGCCGCCGCCGCTGCCGCTGCACCACCAGATTATCAAGGTGGCAAGGGACGAGGATTTC
CGCTCGCGTATCGGGAACGATGGCCGCTACTTCGATCTTGTCGACTTCAGCGCAATCGACGTATTCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13139.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis