Browse Element(s) Details


Os.12460.1.S1_at

Description gb:AK104954.1
DB_XREF= gi:32990163
TID=Os.12460.1
CNT=67
FEA=FLmRNA
TIER=FL+Stack
STK=24
UG=Os.12460 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein S19 gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-G11, full insert sequence.
FL= gb:AK067470.1 gb:AK099047.1 gb:AK104954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3109011/1140S ribosomal protein S19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12460.1.S1_at--1032--411Chr03:17671158..17671180 (23 bp)
ATCATCGATGTCGACCCCAAGGGCG
LOC_Os03g31090
Os.12460.1.S1_at--999--3531Chr03:17671160..17671180 (21 bp)
CATCGATGTCGACCCCAAGGGCGGA
LOC_Os03g31090
Os.12460.1.S1_at--779--1271Chr03:17671337..17671361 (25 bp)
AGATCCATGGATCTTCAACCCTTAC
LOC_Os03g31090
Os.12460.1.S1_at--635--2611Chr03:17671353..17671377 (25 bp)
AACCCTTACTGCCTCTCATATGTTT
LOC_Os03g31090
Os.12460.1.S1_at--6--3671Chr03:17671357..17671381 (25 bp)
CTTACTGCCTCTCATATGTTTGGTG
LOC_Os03g31090
Os.12460.1.S1_at--603--1991Chr03:17671360..17671384 (25 bp)
ACTGCCTCTCATATGTTTGGTGGTT
LOC_Os03g31090
Os.12460.1.S1_at--318--9191Chr03:17671362..17671386 (25 bp)
TGCCTCTCATATGTTTGGTGGTTGA
LOC_Os03g31090
Os.12460.1.S1_at--626--3531Chr03:17671422..17671446 (25 bp)
CATGCCCTATCTTTGGTTGAGTCGG
LOC_Os03g31090
Os.12460.1.S1_at--60--4191Chr03:17671426..17671450 (25 bp)
CCCTATCTTTGGTTGAGTCGGCTAT
LOC_Os03g31090
Os.12460.1.S1_at--372--3691Chr03:17671432..17671456 (25 bp)
CTTTGGTTGAGTCGGCTATAGTTTG
LOC_Os03g31090
Os.12460.1.S1_at--1072--711Chr03:17671528..17671552 (25 bp)
ATGATACTGCAGTATGTGTTTTGTC
LOC_Os03g31090
Target Sequence 
ATCATCGATGTCGACCCCAAGGGCGGAAGACTCATCACCTCCCAGGGAAGGCGTGATCTGGACCAAGTGGCCGGAAGAGT
TGATGTTACCATCGCCTGAACAGATCCATGGATCTTCAACCCTTACTGCCTCTCATATGTTTGGTGGTTGAGTCGGCTAC
AGTTTGTTTGCAGTTTTGAATTAGAACATGCCCTATCTTTGGTTGAGTCGGCTATAGTTTGTTTGCAGTTTTGAATTAGA
ACATGCCCTATCTTTGCTGGCTCAGAGAATTGGAAGTTGGATGCATCTAGGTATGATACTGCAGTATGTGTTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis