Browse Element(s) Details


Os.9404.1.S1_at

Description gb:AK101882.1
DB_XREF= gi:32987091
TID=Os.9404.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070K17, full insert sequence.
FL= gb:AK101882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3111011/11AC transposase, putative, expressed
LOC_Os02g581708/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9404.1.S1_at--709--5592Chr02:35594408..35594432 (25 bp)
GAAATTTTGCTAGTTCTGGAGCAGT
LOC_Os02g58170
Os.9404.1.S1_at--415--2871Chr03:17674502..17674526 (25 bp)
AAGTGGAGCTTGCTTTGTTTCCCAG
LOC_Os03g31110
Os.9404.1.S1_at--39--7672Chr02:35594536..35594560 (25 bp)
GGGATTTCTGGACTTCTTTTCTGCC
LOC_Os02g58170
Os.9404.1.S1_at--1040--10552Chr02:35594549..35594573 (25 bp)
TTCTTTTCTGCCGTTGAGCCTGAAA
LOC_Os02g58170
Os.9404.1.S1_at--1145--9592Chr02:35594575..35594599 (25 bp)
TCATATTTGATTTTGCCTGGTGAAT
LOC_Os02g58170
Os.9404.1.S1_at--1105--4473Chr06:26590144..26590652 (25 bp)
GCCTGGTGAATTCTGCATGAGTGAC
NONE
Os.9404.1.S1_at--375--271Chr03:17674320..17674344 (25 bp)
ATAGATGCAAGGATTAGGCGGCTTT
LOC_Os03g31110
Os.9404.1.S1_at--603--912Chr02:35594633..35594657 (25 bp)
AGGCGGCTTTGTTGCTGTCAGGATA
LOC_Os02g58170
Os.9404.1.S1_at--124--3172Chr02:35594771..35594795 (25 bp)
AATTGTAGACTCTGCTTTTCGCTGC
LOC_Os02g58170
Os.9404.1.S1_at--91--4772Chr02:35594791..35594815 (25 bp)
GCTGCAGTCACTGTCTTTCAGAAGA
LOC_Os02g58170
Os.9404.1.S1_at--561--10531Chr03:17674128..17674152 (25 bp)
TTCAGAAGATTTCAGGGCCCAAGAT
LOC_Os03g31110
Target Sequence 
GAAATTTTGCTAGTTCTGGAGCAGTGGTAAGTGGAGCTTGCTTTGTTTCCCAGCTCATATCNAGTGTTNCCCACNNCATG
TCAGATTACATCCAAAATTTGTACGATGTATTGGAAATTTAGTTGAGCCTGGGATTTCTGGACTTCTTTTCTGCCGTTGA
GCCTGAAATTCATATTTGATTTTGCCTGGTGAATTCTGCATGAGTGACAGGAATAGATGCAAGGATTAGGCGGCTTTGTT
GCTGTCAGGATATGCATGTCTTTTGAGTCCNTTTTTTTTTNCCCCTTTNATGCTGTTGTTAAGCTATGAATATTTTGGAA
GGGGATTTTTTTAGANCAATTTGATTAAGGANCGGTGGATTTTTATGCCAAATTGTAGACTCTGCTTTTCGCTGCAGTCA
CTGTCTTTCAGAAGATTTCAGGGCCCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis