Browse Element(s) Details


Os.23259.1.S1_at

Description gb:AK122080.1
DB_XREF= gi:37991726
TID=Os.23259.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative notchless protein homolog (OSJNBa0071K19.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120J20, full insert sequence.
FL= gb:AK101265.1 gb:AK122080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0154010/11Notchless homolog 1, putative, expressed
LOC_Os07g390101/11lactose permease, putative, expressed
LOC_Os01g401201/11expressed protein
LOC_Os03g311601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01510NANA10+312481..315650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.14491.2.S1_x_at3/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.47463.1.S1_x_at1/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01530OsAffx.18071.1.S1_at11/1110+328501..331850Helix-loop-helix DNA-binding domain containing protein
LOC_Os10g01540Os.23259.1.S1_a_at11/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.2.S1_x_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.1.S1_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_s_at4/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_at2/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.6094.1.S1_at1/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01550Os.27042.1.S1_a_at11/1110+344801..351014transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g01560Os.46455.1.S1_at11/1110+356644..359862Protein kinase domain containing protein, expressed
LOC_Os10g01570Os.46741.1.S1_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01570Os.46741.2.S1_x_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0016020cellular_componentmembrane
GO:0000166molecular_functionnucleotide binding
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23259.1.S1_at--964--8951Chr10:333227..333251 (25 bp)
TGAACTAGTTCCCTTAGAGTTAAGG
LOC_Os10g01540
Os.23259.1.S1_at--144--1571Chr10:333197..333221 (25 bp)
AGCTAGTAGCTTCTTGTCATGGTGG
LOC_Os10g01540
Os.23259.1.S1_at--532--1191Chr10:333193..333217 (25 bp)
AGTAGCTTCTTGTCATGGTGGCTCT
LOC_Os10g01540
Os.23259.1.S1_at--686--811Chr10:333179..333203 (25 bp)
ATGGTGGCTCTCTCTTGTTCTTGGT
LOC_Os10g01540
Os.23259.1.S1_at--94--3631Chr10:333166..333190 (25 bp)
CTTGTTCTTGGTGAGAGATTTTGTA
LOC_Os10g01540
Os.23259.1.S1_at--1148--10831Chr10:333138..333162 (25 bp)
TTGGGTTGGCATTTCTTGTTTTTAT
LOC_Os10g01540
Os.23259.1.S1_at--704--10391Chr10:333114..333138 (25 bp)
TTTTGCAACCAAAGGCTTGAGGGTT
LOC_Os10g01540
Os.23259.1.S1_at--326--4911Chr10:333100..333124 (25 bp)
GCTTGAGGGTTTATAGCTGGTTTTT
LOC_Os10g01540
Os.23259.1.S1_at--439--5231NONE
GAATATAATATTCCGGTGTTTGTTC
NONE
Os.23259.1.S1_at--168--1317Chr12:23622164..23622188 (25 bp)
ATTACAAAGATCCACTCCAGAAGAG
NONE
Os.23259.1.S1_at--1134--6815Chr12:21968686..21968710 (25 bp)
GTTTAAGACAAGTTGAACACACCAA
NONE
Target Sequence 
TGAACTAGTTCCCTTAGAGTTAAGGTACTTAGCTAGTAGCTTCTTGTCATGGTGGCTCTCTCTTGTTCTTGGTGAGAGAT
TTTGTAGGGTTGGGTTGGCATTTCTTGTTTTTATTTTGCAACCAAAGGCTTGAGGGTTTATAGCTGGTTTTTTTTAGATA
ATGGAATATAATATTCCGGTGTTTGTTCNNNNANNNNNNNNNNNNNNNNNNNNNNNNTTGTTCAAAAAGAACTACAGCCA
ATTATTACAAAGATCCACTCCAGAAGAGAGTGTAGTTTAAGACAAGTTGAACACACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis