Browse Element(s) Details


OsAffx.17065.1.A1_at

Description tigr:9636.m01853
TID=OsAffx.17065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g397002/11hypothetical protein
LOC_Os10g015402/11Notchless homolog 1, putative, expressed
LOC_Os11g383301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39710Os.52092.1.S1_at10/111+22723971..22724975expressed protein
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified
LOC_Os01g39750OsAffx.11394.1.S1_at11/111+22739325..22740053hypothetical protein
LOC_Os01g39750Os.50833.1.S2_at2/111+22739325..22740053hypothetical protein
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007165biological_processsignal transduction
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17065.1.A1_at--109--7877Chr11:125589..125613 (25 bp)
GGTTTGGAGGTGGAGCATTTTGAGA
NONE
OsAffx.17065.1.A1_at--109--5935Chr11:24107470..24107495 (24 bp)
GAGCATTTTGAGAGTCTCGGGTGAT
NONE
OsAffx.17065.1.A1_at--582--4951Chr08:11261447..11261471 (25 bp)
GCATTTTGAGAGTCTCGGGTGATGA
NONE
OsAffx.17065.1.A1_at--392--3591Chr08:11261446..11261470 (25 bp)
CATTTTGAGAGTCTCGGGTGATGAT
NONE
OsAffx.17065.1.A1_at--255--8911Chr08:11261441..11261465 (25 bp)
TGAGAGTCTCGGGTGATGATATTGA
NONE
OsAffx.17065.1.A1_at--1091--5991Chr08:11261440..11261464 (25 bp)
GAGAGTCTCGGGTGATGATATTGAC
NONE
OsAffx.17065.1.A1_at--467--6091Chr08:11261438..11261462 (25 bp)
GAGTCTCGGGTGATGATATTGACGC
NONE
OsAffx.17065.1.A1_at--807--7151Chr08:11261436..11261460 (25 bp)
GTCTCGGGTGATGATATTGACGCCT
NONE
OsAffx.17065.1.A1_at--440--9511Chr08:11261435..11261459 (25 bp)
TCTCGGGTGATGATATTGACGCCTG
NONE
OsAffx.17065.1.A1_at--693--3771Chr08:11261434..11261458 (25 bp)
CTCGGGTGATGATATTGACGCCTGT
NONE
OsAffx.17065.1.A1_at--514--9431Chr08:11261433..11261457 (25 bp)
TCGGGTGATGATATTGACGCCTGTG
NONE
Target Sequence 
GGTTTGGAGGTGGAGCATTTTGAGAGTCTCGGGTGATGATATTGACGCCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17065.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis