Browse Element(s) Details


OsAffx.23585.1.S1_at

Description tigr:9629.m03783
TID=OsAffx.23585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3970010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39710Os.52092.1.S1_at10/111+22723971..22724975expressed protein
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified
LOC_Os01g39750OsAffx.11394.1.S1_at11/111+22739325..22740053hypothetical protein
LOC_Os01g39750Os.50833.1.S2_at2/111+22739325..22740053hypothetical protein
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23585.1.S1_at--357--9271NONE
TCCCCTCATCTTAGGAGAAACTCCT
NONE
OsAffx.23585.1.S1_at--330--2471Chr01:22719129..22719153 (25 bp)
AACACCAAGACTGCAGACCTAAGAG
LOC_Os01g39700
OsAffx.23585.1.S1_at--892--5551Chr01:22719173..22719197 (25 bp)
GAAAGACGTCGTGCCATAAGCCAAC
LOC_Os01g39700
OsAffx.23585.1.S1_at--693--9791Chr01:22719189..22719213 (25 bp)
TAAGCCAACAACACAAGCCACTGAG
LOC_Os01g39700
OsAffx.23585.1.S1_at--915--2891Chr01:22719215..22719239 (25 bp)
AAGGAGCCTAGCACCAGGTCGGCCA
LOC_Os01g39700
OsAffx.23585.1.S1_at--355--3731Chr01:22719243..22719267 (25 bp)
CTAAGCACGGCCTATTGTCTCTGGG
LOC_Os01g39700
OsAffx.23585.1.S1_at--90--9431Chr01:22719262..22719286 (25 bp)
TCTGGGCCTAAACCTTCGCCTGGAG
LOC_Os01g39700
OsAffx.23585.1.S1_at--243--5731Chr01:22719290..22719314 (25 bp)
GACTGCCTGCCATCTTATCTGTGGT
LOC_Os01g39700
OsAffx.23585.1.S1_at--1075--431Chr01:22719301..22719325 (25 bp)
ATCTTATCTGTGGTGGCCTCATCAT
LOC_Os01g39700
OsAffx.23585.1.S1_at--381--6251Chr01:22719421..22719445 (25 bp)
GATGGGCTTCAAGGAGTCTCCACTC
LOC_Os01g39700
OsAffx.23585.1.S1_at--847--5531Chr01:22719530..22719554 (25 bp)
GAAACGGATTGGACATACGACGGTA
LOC_Os01g39700
Target Sequence 
TCCCCTCATCTTAGGAGAAACTCCTATCATCGGTTCCTCGAAAAAAAATATAGTAGGAAAAAAACACCAAGACTGCAGAC
CTAAGAGGCTATCTATAGTCAAGAAGGAAAGACGTCGTGCCATAAGCCAACAACACAAGCCACTGAGGAAGGAGCCTAGC
ACCAGGTCGGCCACGGCTAAGCACGGCCTATTGTCTCTGGGCCTAAACCTTCGCCTGGAGCCCGACTGCCTGCCATCTTA
TCTGTGGTGGCCTCATCATCCATCAACTCAGCTACCACCAAACACCATCACCTACACATGGTCGCCACATGGCCCACAAA
CCAACACCCCTCTGCTGGCCAACCCCTGCTCGACGATGGGCTTCAAGGAGTCTCCACTCCTGCTGTTACCCTCCGTCGGC
AACCCTCATTGGCCCTCAGACCACCACATTCATCCTCACCATGGAGCTCCTCGACTAGATCGAGAAACGGATTGGACATA
CGACGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis