Browse Element(s) Details


OsAffx.23584.1.S1_x_at

Description gb:NM_192977.1
DB_XREF= gi:34913037
GEN=P0013G02.9
TID=OsAffx.23584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013G02.9 (P0013G02.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g396509/11Programmed cell death protein 2, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23584.1.S1_x_at--303--3531Chr01:22695676..22695700 (25 bp)
CATCCATGGCATGCTTACTACTAGA
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--224--6491NONE
GATAGGGCAGGATCCCAAACTTGGT
NONE
OsAffx.23584.1.S1_x_at--906--3591Chr01:22694850..22694874 (25 bp)
CTTGGTTTTGTTGTTGGTGTGGCAC
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--102--9471Chr01:22694601..22694625 (25 bp)
TCTGGCTCACATAATGCTTCTGCTA
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--1065--10191Chr01:22694467..22694491 (25 bp)
TATTTGCTGGCAATATATGGCCTGA
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--131--2911Chr01:22694417..22694441 (25 bp)
AAGGTTTCTTGTTTTGCTAGTTGTG
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--941--7951NONE
GGATCAGTTTGAGATAATGCCACAA
NONE
OsAffx.23584.1.S1_x_at--272--1991Chr01:22692513..22692537 (25 bp)
ACTGCTCCATTACTTCCATGTTGAA
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--138--3431Chr01:22692481..22692505 (25 bp)
CAGACTCACTTGATTGGGCAACAAT
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--673--9811Chr01:22692441..22692465 (25 bp)
TAAAGGGTCCTGTGATCAAAATGTC
LOC_Os01g39650
OsAffx.23584.1.S1_x_at--48--7691Chr01:22692394..22692418 (25 bp)
GGGTTCAGTTATCTCCAGCAACAAC
LOC_Os01g39650
Target Sequence 
CATCCATGGCATGCTTACTACTAGATCAGCATGAGCAGGGGAAGGATAGGGCAGGATCCCAAACTTGGTTTTGTTGTTGG
TGTGGCACATGGAAAGGGGAAAAAGTTTGTAGTCGTTGTAGGAAATCCAGTTACTGTTCAAAGAAGCATCAGGAATTGCA
TTGGCGTGCAAAGCACAAGAATGAGTGCCATCAAATATCTGGCTCACATAATGCTTCTGCTATTATGCCAGATGCAGGAA
AAGTATTTGCTGGCAATATATGGCCTGAATACATGGTGGTTGATGAAACCGAAAAGGTTTCTTGTTTTGCTAGTTGTGAG
AATAGATCAGAATTGTTGATGGAACAAGGCCAAAGTGAAGAGGATGACATGACGGCATCATTGATGGATCAGTTTGAGAT
AATGCCACAACTGCTCCATTACTTCCATGTTGAAAATGAACCAGACTCACTTGATTGGGCAACAATAATTGTTTACACAT
GTAAAGGGTCCTGTGATCAAAATGTCAGCTACATGGAAGAATTTGTTTGGGTTCAGTTATCTCCAGCAACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23584.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis