Browse Element(s) Details


OsAffx.23584.2.S1_at

Description tigr:9629.m03778
TID=OsAffx.23584.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Programmed cell death protein 2, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3965010/11Programmed cell death protein 2, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23584.2.S1_at--275--6291Chr01:22694223..22694247 (25 bp)
GATGATGACAATAGATGCTGGGCAT
LOC_Os01g39650
OsAffx.23584.2.S1_at--267--6351Chr01:22694210..22694234 (25 bp)
GATGCTGGGCATCTTTTCTAGAACG
LOC_Os01g39650
OsAffx.23584.2.S1_at--969--7591Chr01:22694204..22694228 (25 bp)
GGGCATCTTTTCTAGAACGCATCTC
LOC_Os01g39650
OsAffx.23584.2.S1_at--553--4971Chr01:22694186..22694210 (25 bp)
GCATCTCAAGAGAACAGGATCAAGT
LOC_Os01g39650
OsAffx.23584.2.S1_at--1073--9711NONE
TCAAGTTTTGAGATACTGCAGGGAA
NONE
OsAffx.23584.2.S1_at--261--9011Chr01:22693537..22693561 (25 bp)
TGCAAAACCACTTTGGGTAGTATAT
LOC_Os01g39650
OsAffx.23584.2.S1_at--391--7851Chr01:22693522..22693546 (25 bp)
GGTAGTATATTCTGGGTCTCTAACC
LOC_Os01g39650
OsAffx.23584.2.S1_at--168--7711Chr01:22693509..22693533 (25 bp)
GGGTCTCTAACCAATGCAGCTAAGC
LOC_Os01g39650
OsAffx.23584.2.S1_at--117--651Chr01:22693496..22693520 (25 bp)
ATGCAGCTAAGCCATCTTGTATATA
LOC_Os01g39650
OsAffx.23584.2.S1_at--382--6891Chr01:22693478..22693502 (25 bp)
GTATATACTGTAATGGTCCACTTTG
LOC_Os01g39650
OsAffx.23584.2.S1_at--215--7071Chr01:22693469..22693493 (25 bp)
GTAATGGTCCACTTTGCTATGAATT
LOC_Os01g39650
Target Sequence 
GATGATGACAATAGATGCTGGGCATCTTTTCTAGAACGCATCTCAAGAGAACAGGATCAAGTTTTGAGATACTGCAGGGA
ATCAACTGCAAAACCACTTTGGGTAGTATATTCTGGGTCTCTAACCAATGCAGCTAAGCCATCTTGTATATACTGTAATG
GTCCACTTTGCTATGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23584.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis