Browse Element(s) Details


Os.49309.1.S1_at

Description gb:AK099956.1
DB_XREF= gi:32985165
TID=Os.49309.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013125M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013125M24, full insert sequence.
FL= gb:AK099956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3968011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39710Os.52092.1.S1_at10/111+22723971..22724975expressed protein
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49309.1.S1_at--647--9011Chr01:22707342..22707366 (25 bp)
TGCAATGCCATTAGAGCGCCCGAAG
LOC_Os01g39680
Os.49309.1.S1_at--1085--3291Chr01:22707371..22707392 (22 bp)
CAAATTAGTGGCTGCTGCTGAGAAT
LOC_Os01g39680
Os.49309.1.S1_at--184--6311Chr01:22707519..22707543 (25 bp)
GATGACAACCTTCTGTTTCTACAAT
LOC_Os01g39680
Os.49309.1.S1_at--895--10731Chr01:22707690..22707714 (25 bp)
TTGACAAGTACACCAATTGCCCACT
LOC_Os01g39680
Os.49309.1.S1_at--1154--7771Chr01:22709319..22709343 (25 bp)
GGTGCTGTGTCAAACGACCTGGTAT
LOC_Os01g39680
Os.49309.1.S1_at--670--7871Chr01:22709509..22709533 (25 bp)
GGTTACAGGTCGAACAGGCTTCAAT
LOC_Os01g39680
Os.49309.1.S1_at--1052--911Chr01:22709524..22709548 (25 bp)
AGGCTTCAATTCTGCAACGCGAGGC
LOC_Os01g39680
Os.49309.1.S1_at--919--2371Chr01:22709549..22709573 (25 bp)
AAACGTCTGCTGTGTTTTGTTTCTC
LOC_Os01g39680
Os.49309.1.S1_at--1067--3351Chr01:22709578..22709602 (25 bp)
CACCTGTCATTTACCTTTGGCTTAA
LOC_Os01g39680
Os.49309.1.S1_at--471--8691Chr01:22709627..22709651 (25 bp)
TGTGCCATGCCCTTGTACATAGAAA
LOC_Os01g39680
Os.49309.1.S1_at--465--8191Chr01:22709676..22709700 (25 bp)
GGAAGAGTTCCAACACCTGCAAATG
LOC_Os01g39680
Target Sequence 
TGCAATGCCATTAGAGCGCCCGAAGCGTTCAAATTAGTGGCTGCTGCTGAGAATGTGAAACCACATCTGTTGAAGATAGA
TCATGATGACAACCTTCTGTTTCTACAATTTAAGGCTGCACTGGAGCAGGTTCACAATGTTAACCATGAGATTGCTATAT
CTCTTGACAAGTACACCAATTGCCCACTGTCCGGGACGGAGATTGCAGAGTTAACTCAGCCATTGAGAAGGTTGTCCTGG
TGCTGTGTCAAACGACCTGGTATTTGAGGATGCAGAGCTTAGGCACGACATAAAGTACTGCCACTGACAGAGAGAATGTG
CAAGAGGTTTGGTTTGGTTACAGGTCGAACAGGCTTCAATTCTGCAACGCGAGGCAAACGTCTGCTGTGTTTTGTTTCTC
TGGGCACCTGTCATTTACCTTTGGCTTAAACAAGGCATTCAGCGGTTGATCGCTGTGCCATGCCCTTGTACATAGAAACA
AATATTATTCTGTACATGGAATGGAAGAGTTCCAACACCTGCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis