Browse Element(s) Details


OsAffx.16318.1.S1_at

Description tigr:9635.m01806
TID=OsAffx.16318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1794011/11hypothetical protein
LOC_Os01g397202/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17900NANA7+10590673..10590903hypothetical protein
LOC_Os07g17910NANA7+10592681..10598408retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g17920OsAffx.31869.5.S1_x_at7/117+10602665..10603456retrotransposon protein, putative, unclassified
LOC_Os07g17920OsAffx.31869.4.S1_x_at2/117+10602665..10603456retrotransposon protein, putative, unclassified
LOC_Os07g17920OsAffx.31869.4.S1_at1/117+10602665..10603456retrotransposon protein, putative, unclassified
LOC_Os07g17930OsAffx.22240.1.S1_x_at1/117+10606283..10606849retrotransposon protein, putative, unclassified
LOC_Os07g17940OsAffx.16318.1.S1_x_at11/117+10609832..10610107hypothetical protein
LOC_Os07g17940OsAffx.16318.1.S1_at11/117+10609832..10610107hypothetical protein
LOC_Os07g17950Os.47463.1.S1_x_at4/117+10617050..10621774transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17950Os.14491.2.S1_x_at3/117+10617050..10621774transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17960NANA7+10623395..10626588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17970Os.15398.1.S1_at11/117+10634750..10641444AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16318.1.S1_at--347--4091Chr07:10610049..10610073 (25 bp)
GCGAGAATGGCGTGGGTAAGACCCC
LOC_Os07g17940
OsAffx.16318.1.S1_at--477--8631Chr07:10610037..10610061 (25 bp)
TGGGTAAGACCCCGGTGGACTCCAT
LOC_Os07g17940
OsAffx.16318.1.S1_at--135--9811Chr07:10609971..10609995 (25 bp)
TAACATCTGAGGCCGAGAAGGATCC
LOC_Os07g17940
OsAffx.16318.1.S1_at--721--5611Chr07:10609921..10609945 (25 bp)
GACAAGAAGCATGAGCTGACTAGGA
LOC_Os07g17940
OsAffx.16318.1.S1_at--850--2711Chr07:10609915..10609939 (25 bp)
AAGCATGAGCTGACTAGGATAACCT
LOC_Os07g17940
OsAffx.16318.1.S1_at--290--8911Chr07:10609910..10609934 (25 bp)
TGAGCTGACTAGGATAACCTCCGGG
LOC_Os07g17940
OsAffx.16318.1.S1_at--548--5411Chr07:10609904..10609928 (25 bp)
GACTAGGATAACCTCCGGGGCGACA
LOC_Os07g17940
OsAffx.16318.1.S1_at--340--8392Chr01:22728696..22728716 (21 bp)
GGCGACAAGAGCTTGGTGTCCTATT
LOC_Os01g39720
OsAffx.16318.1.S1_at--985--4592Chr01:22728697..22728716 (20 bp)
GCGACAAGAGCTTGGTGTCCTATTC
LOC_Os01g39720
OsAffx.16318.1.S1_at--192--7751Chr07:10609872..10609896 (25 bp)
GGTGTCCTATTCACAGGACTAGCAA
LOC_Os07g17940
OsAffx.16318.1.S1_at--1028--7431Chr07:10609871..10609895 (25 bp)
GTGTCCTATTCACAGGACTAGCAAG
LOC_Os07g17940
Target Sequence 
GCGAGAATGGCGTGGGTAAGACCCCGGTGGACTCCATGTCGAAAGATCCTCCTGCAGAAGCGGAGAACGGAACATCGATA
ACATCTGAGGCCGAGAAGGATCCTAACGTGGCCAAATCTTGTCCTTCCGACAAGAAGCATGAGCTGACTAGGATAACCTC
CGGGGCGACAAGAGCTTGGTGTCCTATTCACAGGACTAGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis