Browse Element(s) Details


Os.15398.1.S1_at

Description gb:AK108656.1
DB_XREF= gi:32993865
TID=Os.15398.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E06, full insert sequence.
FL= gb:AK108656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1797011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17940OsAffx.16318.1.S1_x_at11/117+10609832..10610107hypothetical protein
LOC_Os07g17940OsAffx.16318.1.S1_at11/117+10609832..10610107hypothetical protein
LOC_Os07g17950Os.47463.1.S1_x_at4/117+10617050..10621774transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17950Os.14491.2.S1_x_at3/117+10617050..10621774transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17960NANA7+10623395..10626588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17970Os.15398.1.S1_at11/117+10634750..10641444AMP-binding enzyme family protein, expressed
LOC_Os07g17980OsAffx.26046.1.S1_at1/117+10644104..10645768hypothetical protein
LOC_Os07g17990NANA7+10648391..10649134hypothetical protein
LOC_Os07g18000NANA7+10650795..10653043Zinc knuckle family protein
LOC_Os07g18010NANA7+10655339..10655860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18020NANA7+10661154..10662257hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009698biological_processphenylpropanoid metabolism
GO:0005777cellular_componentperoxisome
GO:0004321molecular_functionfatty-acyl-CoA synthase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15398.1.S1_at--32--3431Chr07:10640685..10640709 (25 bp)
CAGAGCTGGAGCTTGTCCTGCATTC
LOC_Os07g17970
Os.15398.1.S1_at--1031--4391Chr07:10640713..10640737 (25 bp)
GCCACAAATTGTTGATGCTGCAGTT
LOC_Os07g17970
Os.15398.1.S1_at--806--1211Chr07:10640734..10640989 (25 bp)
AGTTATGCCGTATCCTCACGAAGAA
LOC_Os07g17970
Os.15398.1.S1_at--90--8271Chr07:10640994..10641018 (25 bp)
GGCAGATACCAGTAGCACTTGTCGT
LOC_Os07g17970
Os.15398.1.S1_at--593--5091Chr07:10641008..10641032 (25 bp)
GCACTTGTCGTAAAGCAACCAGGAA
LOC_Os07g17970
Os.15398.1.S1_at--860--2851Chr07:10641102..10641126 (25 bp)
AAGTGCTGTTTGTTGACTCCATACC
LOC_Os07g17970
Os.15398.1.S1_at--970--2271Chr07:10641128..10641152 (25 bp)
AAATCGCCATCTGGGAAGATCTTGA
LOC_Os07g17970
Os.15398.1.S1_at--476--5191Chr07:10641158..10641182 (25 bp)
GAATTGGTAAATCATCTGCGGTTGT
LOC_Os07g17970
Os.15398.1.S1_at--822--5731Chr07:10641201..10641225 (25 bp)
GACTGTGCGAGTGTTGTACCCTATA
LOC_Os07g17970
Os.15398.1.S1_at--1104--6971Chr07:10641216..10641240 (25 bp)
GTACCCTATAGTTCAATTCTTGTGT
LOC_Os07g17970
Os.15398.1.S1_at--1160--7571Chr07:10641333..10641357 (25 bp)
GGGCTGCACTATACTGTCGAACATG
LOC_Os07g17970
Target Sequence 
CAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACAAATTGTTGATGCTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGG
CAGATACCAGTAGCACTTGTCGTAAAGCAACCAGGAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCNNGCA
NGGTAGCTCCATACNAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCAAATCGCCATCTGGGAAGATCTTGAGA
AGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGAGATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTC
TTGTGTCNAAAAGGNNNNNNNNNNNNNNNAAATGTGCTGCAATTGTACCGGAAGAAGAATATTGGATAAACGGAAGGCTC
ATAACATATGTTTATGAGGGGCTGCACTATACTGTCGAACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis