Browse Element(s) Details


OsAffx.17065.1.A1_s_at

Description tigr:9636.m01853
TID=OsAffx.17065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g015404/11Notchless homolog 1, putative, expressed
LOC_Os05g455602/11hypothetical protein
LOC_Os07g381901/11hypothetical protein
LOC_Os02g302901/11SWIM zinc finger family protein
LOC_Os11g383301/11expressed protein
LOC_Os03g299901/11hypothetical protein
LOC_Os01g397001/11hypothetical protein
LOC_Os07g124301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01510NANA10+312481..315650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.14491.2.S1_x_at3/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01520Os.47463.1.S1_x_at1/1110+317160..320636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01530OsAffx.18071.1.S1_at11/1110+328501..331850Helix-loop-helix DNA-binding domain containing protein
LOC_Os10g01540Os.23259.1.S1_a_at11/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.2.S1_x_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.1.S1_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_s_at4/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_at2/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.6094.1.S1_at1/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01550Os.27042.1.S1_a_at11/1110+344801..351014transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g01560Os.46455.1.S1_at11/1110+356644..359862Protein kinase domain containing protein, expressed
LOC_Os10g01570Os.46741.1.S1_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01570Os.46741.2.S1_x_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007165biological_processsignal transduction
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17065.1.A1_s_at--340--47717Chr11:24107193..24107216 (24 bp)
GCTCCTCCCTTCTTAGGCTAGGCTA
NONE
OsAffx.17065.1.A1_s_at--249--9253Chr05:26323463..26323487 (25 bp)
TCCCTTCTTAGGCTAGGCTACTTCC
LOC_Os05g45560
OsAffx.17065.1.A1_s_at--851--7711Chr08:11261676..11261700 (25 bp)
GGGTGGCATGCGGAGTTGGTTTCCA
NONE
OsAffx.17065.1.A1_s_at--979--6031Chr08:11261664..11261688 (25 bp)
GAGTTGGTTTCCAGCGTCCTGCCTC
NONE
OsAffx.17065.1.A1_s_at--551--6851Chr08:11261658..11261682 (25 bp)
GTTTCCAGCGTCCTGCCTCGCTGGT
NONE
OsAffx.17065.1.A1_s_at--935--3771Chr08:11261581..11261605 (25 bp)
CTCTGGTGGAACTGCAATGTGATTG
NONE
OsAffx.17065.1.A1_s_at--770--8174Chr11:24107363..24107382 (20 bp)
GGAACTGCAATGTGATTGACTGTTG
NONE
OsAffx.17065.1.A1_s_at--655--9014Chr11:24107363..24107384 (22 bp)
TGCAATGTGATTGACTGTTGAGATT
NONE
OsAffx.17065.1.A1_s_at--95--8811Chr08:11261541..11261565 (25 bp)
TGTTGAGGCAGAGTCGGAGCTGTTT
NONE
OsAffx.17065.1.A1_s_at--221--2591Chr08:11261500..11261524 (25 bp)
AACGATGACCATCAACAGACGTCCA
NONE
OsAffx.17065.1.A1_s_at--470--6311Chr08:11261497..11261521 (25 bp)
GATGACCATCAACAGACGTCCAGGC
NONE
Target Sequence 
GCTCCTCCCTTCTTAGGCTAGGCTACTTCCAGTCGATGCTGGGGAGCTCCTTGGTGCGGTAGGGGTGGCATGCGGAGTTG
GTTTCCAGCGTCCTGCCTCGCTGGTCGTCGGCCGCGCCGTAGGTTTGCTGTAGCTGGGTTCCTGTGTGTGAGGTGGTCTC
TGGTGGAACTGCAATGTGATTGACTGTTGAGATTGACTGTTGAGGCAGAGTCGGAGCTGTTTGTCTTGCAAGCTCGGCAA
CGATGACCATCAACAGACGTCCAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17065.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis