Browse Element(s) Details


Os.46741.1.S1_at

Description gb:AK112062.1
DB_XREF= gi:37988725
TID=Os.46741.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA cytosine methyltransferase MET2a (OSJNBa0071K19.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D06, full insert sequence.
FL= gb:AK112062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0157011/11DNA cytosine methyltransferase MET2a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01540Os.23259.1.S1_a_at11/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.2.S1_x_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.1.S1_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_s_at4/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_at2/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.6094.1.S1_at1/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01550Os.27042.1.S1_a_at11/1110+344801..351014transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g01560Os.46455.1.S1_at11/1110+356644..359862Protein kinase domain containing protein, expressed
LOC_Os10g01570Os.46741.1.S1_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01570Os.46741.2.S1_x_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01580NANA10+370435..371193hypothetical protein
LOC_Os10g01590NANA10+374930..376357hypothetical protein
LOC_Os10g01600NANA10+377998..382873retrotransposon protein, putative, unclassified
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006342biological_processchromatin silencing
GO:0045814biological_processnegative regulation of gene expression, epigenetic
GO:0003677molecular_functionDNA binding
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46741.1.S1_at--111--5971Chr10:362216..362240 (25 bp)
GAGACGGTTCCTACAGTTGTGACCC
LOC_Os10g01570
Os.46741.1.S1_at--93--1531Chr10:361981..362214 (25 bp)
AGCAGAGCCACACAACCAGATTATA
LOC_Os10g01570
Os.46741.1.S1_at--427--10231Chr10:362089..362113 (25 bp)
TATTGCATCCGAATCAGGCGAGAGT
LOC_Os10g01570
Os.46741.1.S1_at--899--7671Chr10:362033..362057 (25 bp)
GGGTTCCCAGACTACTACAAGATGT
LOC_Os10g01570
Os.46741.1.S1_at--873--6671Chr10:361839..361863 (25 bp)
GTTGCTCGTGCATTGGGTTACTCCC
LOC_Os10g01570
Os.46741.1.S1_at--189--10851Chr10:361814..361838 (25 bp)
TTGGGCTTGCATACCAGCGTGAGTC
LOC_Os10g01570
Os.46741.1.S1_at--724--9371Chr10:361639..361663 (25 bp)
TCGATTCGAACCGATCCGGGAGAAT
LOC_Os10g01570
Os.46741.1.S1_at--426--2451Chr10:361607..361631 (25 bp)
AAAATCACTGATCAGCCACCTTGGT
LOC_Os10g01570
Os.46741.1.S1_at--656--3371Chr10:361591..361615 (25 bp)
CACCTTGGTGCTGTCATGTGATCAC
LOC_Os10g01570
Os.46741.1.S1_at--485--9271Chr10:361519..361543 (25 bp)
TCCTGCTTGAGTGCTTGTTGTACTT
LOC_Os10g01570
Os.46741.1.S1_at--637--8651Chr10:361456..361480 (25 bp)
TGGGCTATCTTATGTCTGTATCCTG
LOC_Os10g01570
Target Sequence 
GAGACGGTTCCTACAGTTGTGACCCGAGCAGAGCCACACAACCAGATTATATTGCATCCGAATCAGGCGAGAGTTCTGAC
CGTAAGGGAGAATGCAAGGTTGCAGGGGTTCCCAGACTACTACAAGATGTTTGGCCCTATCAAAGAGAAGTATATACAAG
TTGGCAATGCAGTTGCTGTACCTGTTGCTCGTGCATTGGGTTACTCCCTTGGGCTTGCATACCAGCGTGAGTCGGAGGGG
AGCAGCCCTCTGTTCGTCCTGCCAGACAGCTTCACGGAAGTCGGGCGACAGGCGGCGCCGGCAAGAGCATCCTCTGTTGG
TATCCCTGTTGGCGAGGTTGTTGAGCAATAGAACACTTGGGTAGAGTAGAGTCATTATTTGGTTCGATTCGAACCGATCC
GGGAGAATGTTGTTTAAAATCACTGATCAGCCACCTTGGTGCTGTCATGTGATCACCATCAATGTTATTATTGATTGATT
GAATGTTGTAAGGCTGGTGGCACTCCTGCTTGAGTGCTTGTTGTACTTGTAGCATAAGGTCCAAAACATTCATTCATATC
CTTCTATGGGCTATCTTATGTCTGTATCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis