Browse Element(s) Details


Os.6674.1.S1_a_at

Description gb:AK109229.1
DB_XREF= gi:32994438
TID=Os.6674.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0071K19.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F01, full insert sequence.
FL= gb:AK109229.1 gb:AK103627.1 gb:AK072495.1 gb:AK064283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0161010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01570Os.46741.1.S1_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01570Os.46741.2.S1_x_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01580NANA10+370435..371193hypothetical protein
LOC_Os10g01590NANA10+374930..376357hypothetical protein
LOC_Os10g01600NANA10+377998..382873retrotransposon protein, putative, unclassified
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein
LOC_Os10g01620OsAffx.6548.1.S1_at11/1110+402846..403198hypothetical protein
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6674.1.S1_a_at--68--4471NONE
GCCTCGACAAGTTCTGGAGTGCCTT
NONE
Os.6674.1.S1_a_at--716--8551Chr10:398127..398151 (25 bp)
TGGAGTGCCTTGTCGCCTCAAGCAC
LOC_Os10g01610
Os.6674.1.S1_a_at--317--2731Chr10:398108..398132 (25 bp)
AAGCACGGCATGAGCTCCTCAGGAT
LOC_Os10g01610
Os.6674.1.S1_a_at--512--3471Chr10:398089..398113 (25 bp)
CAGGATCGATAAGCAGACTCTCATT
LOC_Os10g01610
Os.6674.1.S1_a_at--599--5711Chr10:398074..398098 (25 bp)
GACTCTCATTGAGCATGCACGCAGG
LOC_Os10g01610
Os.6674.1.S1_a_at--591--9031Chr10:398059..398083 (25 bp)
TGCACGCAGGAATTTGTACTGTTCA
LOC_Os10g01610
Os.6674.1.S1_a_at--383--791Chr10:398027..398051 (25 bp)
ATGGGCTGCTTTTAGAAAGTTTCAC
LOC_Os10g01610
Os.6674.1.S1_a_at--772--2831Chr10:398011..398035 (25 bp)
AAGTTTCACACAAATGGTCATGCAT
LOC_Os10g01610
Os.6674.1.S1_a_at--214--2371Chr10:397969..397993 (25 bp)
AAAAGGTCCAGGTGTTGTACAAGAT
LOC_Os10g01610
Os.6674.1.S1_a_at--7--7651Chr10:397936..397960 (25 bp)
GGGAGGCCTTTCGACAACAAAGGAT
LOC_Os10g01610
Os.6674.1.S1_a_at--660--2311Chr10:397918..397942 (25 bp)
AAAGGATGGCCTCCTGACTCTTCTT
LOC_Os10g01610
Target Sequence 
GCCTCGACAAGTTCTGGAGTGCCTTGTCGCCTCAAGCACGGCATGAGCTCCTCAGGATCGATAAGCAGACTCTCATTGAG
CATGCACGCAGGAATTTGTACTGTTCAAGGTGCNATGGGCTGCTTTTAGAAAGTTTCACACAAATGGTCATGCATGGGAA
GTTACTGCAACAAAAAGGTCCAGGTGTTGTACAAGATGATTCTTGGGGAGGCCTTTCGACAACAAAGGATGGCCTCCTGA
CTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6674.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis