Browse Element(s) Details


OsAffx.30228.1.S1_at

Description tigr:9638.m00067
TID=OsAffx.30228.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0163011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein
LOC_Os10g01620OsAffx.6548.1.S1_at11/1110+402846..403198hypothetical protein
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30228.1.S1_at--33--911Chr10:409369..409393 (25 bp)
AGGCGGCCAGTGAACCCAGCCGAGC
LOC_Os10g01630
OsAffx.30228.1.S1_at--399--7271Chr10:409267..409291 (25 bp)
GTCCACCACGGTTTTGCACTCTTGG
LOC_Os10g01630
OsAffx.30228.1.S1_at--1099--511Chr10:409263..409287 (25 bp)
ACCACGGTTTTGCACTCTTGGGTTG
LOC_Os10g01630
OsAffx.30228.1.S1_at--531--1911Chr10:409260..409284 (25 bp)
ACGGTTTTGCACTCTTGGGTTGTGG
LOC_Os10g01630
OsAffx.30228.1.S1_at--658--9011Chr10:409253..409277 (25 bp)
TGCACTCTTGGGTTGTGGTGGCAGC
LOC_Os10g01630
OsAffx.30228.1.S1_at--526--4151Chr10:409129..409153 (25 bp)
CGCGAGCTCGCGTCGAGAGGAATCC
LOC_Os10g01630
OsAffx.30228.1.S1_at--596--1591Chr10:409125..409149 (25 bp)
AGCTCGCGTCGAGAGGAATCCAAGA
LOC_Os10g01630
OsAffx.30228.1.S1_at--148--8211Chr10:409111..409135 (25 bp)
GGAATCCAAGACAGAGACGGCGGCT
LOC_Os10g01630
OsAffx.30228.1.S1_at--852--571Chr10:409108..409132 (25 bp)
ATCCAAGACAGAGACGGCGGCTGGT
LOC_Os10g01630
OsAffx.30228.1.S1_at--345--8251Chr10:409083..409107 (25 bp)
GGCAGAGCCATGAGTCGGCGGCGAA
LOC_Os10g01630
OsAffx.30228.1.S1_at--189--7191Chr10:409070..409094 (25 bp)
GTCGGCGGCGAAGGCAGATTGGCTG
LOC_Os10g01630
Target Sequence 
AGGCGGCCAGTGAACCCAGCCGAGCTCCGCCGCCGCTACCGCACCGACGCAACACGCCACTGCAGTCACCTATCTTCTCC
CTTTCCCACCGCCCCACCCGGCGTCCACCACGGTTTTGCACTCTTGGGTTGTGGTGGCAGCGGCCGGCGATGGGAGAGGC
GGCCGGCCGCGCTGGCGGGAGAAGGGAAGAGGAGGGCCGAGAGAGGGGCGGAGCGGCCGGCGGTGGAGGACCGAAGCCGG
CGCGAGCTCGCGTCGAGAGGAATCCAAGACAGAGACGGCGGCTGGTGGCAGAGCCATGAGTCGGCGGCGAAGGCAGATTG
GCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis