Browse Element(s) Details


OsAffx.30232.3.S1_x_at

Description tigr:9638.m00073
TID=OsAffx.30232.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative hsr201 hypersensitivity-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0169011/11Transferase family protein
LOC_Os10g017205/11Transferase family protein
LOC_Os10g017003/11expressed protein
LOC_Os10g016802/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein
LOC_Os10g01730OsAffx.18076.1.S1_at11/1110+458063..460201hypothetical protein
LOC_Os10g01740NANA10+461662..462058hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30232.3.S1_x_at--215--10753Chr10:453427..453451 (25 bp)
TTGACACCATGGTGACCCGGCACTT
LOC_Os10g01720
OsAffx.30232.3.S1_x_at--915--813Chr10:453435..453459 (25 bp)
ATGGTGACCCGGCACTTCCTGTTCG
LOC_Os10g01720
OsAffx.30232.3.S1_x_at--150--8232Chr10:453445..453469 (25 bp)
GGCACTTCCTGTTCGGCCGGCGAGA
LOC_Os10g01720
OsAffx.30232.3.S1_x_at--829--1612Chr10:441167..441191 (25 bp)
AGCTGGTCTGCGAGGCGAGGCTACA
LOC_Os10g01690
OsAffx.30232.3.S1_x_at--42--1931Chr10:441217..441241 (25 bp)
ACGGTGGACTTGATGGCATCGCTGC
LOC_Os10g01690
OsAffx.30232.3.S1_x_at--812--8653Chr10:453812..453836 (25 bp)
TGGGCGCGGCATGGTGTTCGACGGG
LOC_Os10g01720
OsAffx.30232.3.S1_x_at--409--3751Chr10:441295..441319 (25 bp)
CTCTTCGCGGAGCTAGACTTTGGGC
LOC_Os10g01690
OsAffx.30232.3.S1_x_at--725--5731Chr10:441325..441349 (25 bp)
GACTGGGTCATTAGCGGCATGGCAC
LOC_Os10g01690
OsAffx.30232.3.S1_x_at--477--3592Chr10:441333..441357 (25 bp)
CATTAGCGGCATGGCACAGCCGATG
LOC_Os10g01690
OsAffx.30232.3.S1_x_at--1011--611Chr10:441355..441379 (25 bp)
ATGCTGGCGACTTTCCTGGTGAGGT
LOC_Os10g01690
OsAffx.30232.3.S1_x_at--275--9273Chr10:441368..441392 (25 bp)
TCCTGGTGAGGTGCAGGAACACCGA
LOC_Os10g01690
Target Sequence 
TTGACACCATGGTGACCCGGCACTTCCTGTTCGGCCGGCGAGAGATGGCCGCGCTACGGCGCCTCCTCCCCGCACCCCTC
GGCCGGCGCTGCACGGACTTCCAGCTGCTCCCCGCCGCGCTATGGCGGTGCCGCACGGCGGCGCTGCCCTACGCCCCGCA
CCGGCGAGTGCGTGCCTACCTCCCCCTGAGCACGCGCGGGAGACGGTGGCGCAGCCAGGGGCTGCACATCCCGGAGGGGT
ACTACGGCAACGCGCTCGCCTACTCCATCGCCAACGCCAGCGCCGGCGATCTGTGCGGCGGGACGCTGGGGCAGACGGTG
GAGCTGGTCTGCGAGGCGAGGCTACAGGTGACGGGGGAGTACGTGAGATCGACGGTGGACTTGATGGCATCGCTGCGTGG
GCGCGGCATGGTGTTCGACGGGGTGTACGTGGTGTCGGACCTTACGCGGCTCTTCGCGGAGCTAGACTTTGGGCGCGGGG
ACTGGGTCATTAGCGGCATGGCACAGCCGATGCTGGCGACTTTCCTGGTGAGGTGCAGGAACACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30232.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis