Browse Element(s) Details


OsAffx.18076.1.S1_at

Description tigr:9638.m00077
TID=OsAffx.18076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0173011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein
LOC_Os10g01730OsAffx.18076.1.S1_at11/1110+458063..460201hypothetical protein
LOC_Os10g01740NANA10+461662..462058hypothetical protein
LOC_Os10g01750OsAffx.437.1.S1_x_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01750OsAffx.437.1.S1_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01760OsAffx.30233.1.S1_at11/1110+473086..473619Peroxidase 53 precursor, putative
LOC_Os10g01770OsAffx.940.1.S1_x_at1/1110+484511..491354transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18076.1.S1_at--627--8351Chr10:458280..458301 (22 bp)
GGCGGAGATTACCACGGTTTTCTAT
LOC_Os10g01730
OsAffx.18076.1.S1_at--264--9331Chr10:459711..459731 (21 bp)
TCGCGCATCTTCGATACATTTCGTG
LOC_Os10g01730
OsAffx.18076.1.S1_at--939--3951Chr10:459741..459765 (25 bp)
CGGAGCGAGATGTCTTCACGTCTAA
LOC_Os10g01730
OsAffx.18076.1.S1_at--87--10491Chr10:459755..459779 (25 bp)
TTCACGTCTAAAGACCACGTCGTGG
LOC_Os10g01730
OsAffx.18076.1.S1_at--802--8451Chr10:459777..459801 (25 bp)
TGGCGATGATTCCACAAATTCCAAA
LOC_Os10g01730
OsAffx.18076.1.S1_at--712--4231Chr10:459821..459845 (25 bp)
CCGAGAGTGTTTAGCTGGGATCATT
LOC_Os10g01730
OsAffx.18076.1.S1_at--791--4171Chr10:459870..459894 (25 bp)
CCCACTATCGTTGGAATGCTGAGAT
LOC_Os10g01730
OsAffx.18076.1.S1_at--340--10231Chr10:459898..459922 (25 bp)
TATTGAGGCTCGTCCAGAACTCCAT
LOC_Os10g01730
OsAffx.18076.1.S1_at--565--931Chr10:459939..460035 (25 bp)
AGGCACAGGTTCCTCTTAGTAGAGA
LOC_Os10g01730
OsAffx.18076.1.S1_at--65--1331Chr10:460033..460057 (25 bp)
AGAGGCGCTCTCTAACCAGAAGCCA
LOC_Os10g01730
OsAffx.18076.1.S1_at--1023--5011Chr10:460123..460147 (25 bp)
GCAGGGAGCCACACTCAGCAAGGTA
LOC_Os10g01730
Target Sequence 
GGCGGAGATTACCACGGTTTTCTATTACCGTACCTACCTCGCGCATCTTCGATACATTTCGTGAGCAAGTGACGGAGCGA
GATGTCTTCACGTCTAAAGACCACGTCGTGGCGATGATTCCACAAATTCCAAAAGCACAGCAGATAGAAAACCCGAGAGT
GTTTAGCTGGGATCATTGGTGGGGGAAGGAGAGTCGATACCCCCACTATCGTTGGAATGCTGAGATGGATATTGAGGCTC
GTCCAGAACTCCATAGCAAACGGACAGTGGAGGCACAGGTTCCTCTTAGTAGAGAGGCGCTCTCTAACCAGAAGCCATGC
AAAGAACTGGATCTTCAGGGGAGCTTTGTTTTCCCAGAAAAATTTCCAGTTAGGGCAGGGAGGCAGGGAGCCACACTCAG
CAAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis