Browse Element(s) Details


OsAffx.437.1.S1_at

Description gb:NM_194528.1
DB_XREF= gi:37530415
TID=OsAffx.437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative copia-type polyprotein (OSJNBa0065H03.10), mRNA.
PROD=putative copia-type polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0175011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein
LOC_Os10g01730OsAffx.18076.1.S1_at11/1110+458063..460201hypothetical protein
LOC_Os10g01740NANA10+461662..462058hypothetical protein
LOC_Os10g01750OsAffx.437.1.S1_x_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01750OsAffx.437.1.S1_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01760OsAffx.30233.1.S1_at11/1110+473086..473619Peroxidase 53 precursor, putative
LOC_Os10g01770OsAffx.940.1.S1_x_at1/1110+484511..491354transposon protein, putative, unclassified
LOC_Os10g01780OsAffx.18078.1.S1_at11/1110+493773..494781AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.437.1.S1_at--227--4131Chr10:467141..467165 (25 bp)
CGCAGTGCCTGTTCACGCGGGAGAA
LOC_Os10g01750
OsAffx.437.1.S1_at--966--3451Chr10:467139..467163 (25 bp)
CAGTGCCTGTTCACGCGGGAGAACT
LOC_Os10g01750
OsAffx.437.1.S1_at--141--8791Chr10:467132..467156 (25 bp)
TGTTCACGCGGGAGAACTGCACGGC
LOC_Os10g01750
OsAffx.437.1.S1_at--579--2191Chr10:467051..467075 (25 bp)
ACAACAACTACTACGGCAGCCTCCT
LOC_Os10g01750
OsAffx.437.1.S1_at--735--9291Chr10:467004..467028 (25 bp)
TCCGACCAGGTCATGCTCTCTGACG
LOC_Os10g01750
OsAffx.437.1.S1_at--506--5851Chr10:467001..467025 (25 bp)
GACCAGGTCATGCTCTCTGACGACC
LOC_Os10g01750
OsAffx.437.1.S1_at--421--1031Chr10:466997..467021 (25 bp)
AGGTCATGCTCTCTGACGACCCCTA
LOC_Os10g01750
OsAffx.437.1.S1_at--1120--4511Chr10:466943..466967 (25 bp)
GCCGCTTCGCTGGCAGCCAGAAGAG
LOC_Os10g01750
OsAffx.437.1.S1_at--848--4411Chr10:466928..466952 (25 bp)
GCCAGAAGAGCTTCTTCAGGAGCTT
LOC_Os10g01750
OsAffx.437.1.S1_at--882--4211Chr10:466869..466893 (25 bp)
CCGCTCACCGGGATGGACGGACAGA
LOC_Os10g01750
OsAffx.437.1.S1_at--1042--9671Chr10:466865..466889 (25 bp)
TCACCGGGATGGACGGACAGATCAG
LOC_Os10g01750
Target Sequence 
CGCAGTGCCTGTTCACGCGGGAGAACTGCACGGCGGGGCAGCCGGACGACGCGCTGGAGAACCTGGACCCGGTCACCCCC
GACGTGTTCGACAACAACTACTACGGCAGCCTCCTCCGCGGCACCGCCAAGCTCCCCTCCGACCAGGTCATGCTCTCTGA
CGACCCCTACGCCGCCGCCACCACCGCGCCCTTCGTCCGCCGCTTCGCTGGCAGCCAGAAGAGCTTCTTCAGGAGCTTCG
CGGCGTCGATGATCAAGATGGGGAACATCAGCCCGCTCACCGGGATGGACGGACAGATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis