Browse Element(s) Details


OsAffx.18072.1.S1_at

Description tigr:9638.m00071
TID=OsAffx.18072.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0167010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18072.1.S1_at--596--911Chr10:429650..429674 (25 bp)
AGGCTCCAGCCCATGGAAACGATTC
LOC_Os10g01670
OsAffx.18072.1.S1_at--665--831Chr10:429638..429662 (25 bp)
ATGGAAACGATTCCCACGCCGACCG
LOC_Os10g01670
OsAffx.18072.1.S1_at--786--3351Chr10:429624..429648 (25 bp)
CACGCCGACCGTCATTAACGAGAAC
LOC_Os10g01670
OsAffx.18072.1.S1_at--179--4511Chr10:429621..429645 (25 bp)
GCCGACCGTCATTAACGAGAACAAT
LOC_Os10g01670
OsAffx.18072.1.S1_at--270--5331Chr10:429596..429620 (25 bp)
GAAGTGGAGTTCATCGCGGCCGACA
LOC_Os10g01670
OsAffx.18072.1.S1_at--726--2871Chr10:429595..429619 (25 bp)
AAGTGGAGTTCATCGCGGCCGACAT
LOC_Os10g01670
OsAffx.18072.1.S1_at--7--3951NONE
CGGCTTTGTGCCAAGGATCAAGATC
NONE
OsAffx.18072.1.S1_at--534--2911Chr10:428772..428796 (25 bp)
AAGGATCAAGATCAGCGCCCGCCAG
LOC_Os10g01670
OsAffx.18072.1.S1_at--475--7551Chr10:428745..428769 (25 bp)
GTGGCGAACTCTGGCGACCACCATG
LOC_Os10g01670
OsAffx.18072.1.S1_at--1113--4591Chr10:428732..428756 (25 bp)
GCGACCACCATGGTTGTGGACCTGA
LOC_Os10g01670
OsAffx.18072.1.S1_at--724--3371Chr10:428727..428751 (25 bp)
CACCATGGTTGTGGACCTGATGGGC
LOC_Os10g01670
Target Sequence 
AGGCTCCAGCCCATGGAAACGATTCCCACGCCGACCGTCATTAACGAGAACAATGAAGTGGAGTTCATCGCGGCCGACAT
GGCCGGCTTTGTGCCAAGGATCAAGATCAGCGCCCGCCAGCGGTGGCGAACTCTGGCGACCACCATGGTTGTGGACCTGA
TGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis