Browse Element(s) Details


OsAffx.30230.1.S1_at

Description tigr:9638.m00070
TID=OsAffx.30230.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0166011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein
LOC_Os10g01620OsAffx.6548.1.S1_at11/1110+402846..403198hypothetical protein
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30230.1.S1_at--442--5871Chr10:420134..420158 (25 bp)
GAGCGCGTGAGGTCCACCGTCGCCT
LOC_Os10g01660
OsAffx.30230.1.S1_at--708--2931Chr10:420050..420074 (25 bp)
AAGGCGTACGCGGTGTCCGACTTCA
LOC_Os10g01660
OsAffx.30230.1.S1_at--699--9951Chr10:420044..420068 (25 bp)
TACGCGGTGTCCGACTTCACGAGGC
LOC_Os10g01660
OsAffx.30230.1.S1_at--464--7251Chr10:420036..420060 (25 bp)
GTCCGACTTCACGAGGCTCGGCGAG
LOC_Os10g01660
OsAffx.30230.1.S1_at--694--7211Chr10:419958..419982 (25 bp)
GTCGTTCGTGAGCTTCCACAGCAGG
LOC_Os10g01660
OsAffx.30230.1.S1_at--74--10631Chr10:419954..419978 (25 bp)
TTCGTGAGCTTCCACAGCAGGTGGA
LOC_Os10g01660
OsAffx.30230.1.S1_at--418--5411Chr10:419931..419955 (25 bp)
GAAGCTGGTGAGCTCTGACGGCGAT
LOC_Os10g01660
OsAffx.30230.1.S1_at--623--5411Chr10:419894..419918 (25 bp)
GAAGCTGTTGCTGCGTTGATGCTGC
LOC_Os10g01660
OsAffx.30230.1.S1_at--956--5411Chr10:419865..419889 (25 bp)
GAAGCCGGCCATGGATAGGTTCGAC
LOC_Os10g01660
OsAffx.30230.1.S1_at--71--4491Chr10:419862..419886 (25 bp)
GCCGGCCATGGATAGGTTCGACAAG
LOC_Os10g01660
OsAffx.30230.1.S1_at--1--9371Chr10:419845..419869 (25 bp)
TCGACAAGGAGTTGGCATTATGGTT
LOC_Os10g01660
Target Sequence 
GAGCGCGTGAGGTCCACCGTCGCCTTCCTGGCGTCGCTGCGCCTGCGCCGCAGCGGCGGCCGGTTCCCGGCGCTGGCGTT
CGACAAGGCGTACGCGGTGTCCGACTTCACGAGGCTCGGCGAGGACGGGCTGGATTTCGGGTGGGCGGAGCGCGTGGGCG
GCGGCGTGGCCACGCCGTCGTTCGTGAGCTTCCACAGCAGGTGGAAGCTGGTGAGCTCTGACGGCGATGGCGAGGAAGAA
GAAGCTGTTGCTGCGTTGATGCTGCTGCCGAAGCCGGCCATGGATAGGTTCGACAAGGAGTTGGCATTATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis