Browse Element(s) Details


OsAffx.6548.1.S1_at

Description tigr:9638.m00066
TID=OsAffx.6548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0162011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01600NANA10+377998..382873retrotransposon protein, putative, unclassified
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein
LOC_Os10g01620OsAffx.6548.1.S1_at11/1110+402846..403198hypothetical protein
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6548.1.S1_at--1069--9951Chr10:402876..402900 (25 bp)
TACCAAGAATCCCACAACATTCCTA
LOC_Os10g01620
OsAffx.6548.1.S1_at--626--3031Chr10:402883..402907 (25 bp)
AATCCCACAACATTCCTAAAACCTG
LOC_Os10g01620
OsAffx.6548.1.S1_at--822--4351Chr10:402887..402911 (25 bp)
CCACAACATTCCTAAAACCTGCATA
LOC_Os10g01620
OsAffx.6548.1.S1_at--34--2511Chr10:402891..402915 (25 bp)
AACATTCCTAAAACCTGCATATGGG
LOC_Os10g01620
OsAffx.6548.1.S1_at--1006--9811Chr10:402899..402923 (25 bp)
TAAAACCTGCATATGGGAAAGACCA
LOC_Os10g01620
OsAffx.6548.1.S1_at--948--1371Chr10:402918..403106 (25 bp)
AGACCAAAGGGAAGGCATTGTCATG
LOC_Os10g01620
OsAffx.6548.1.S1_at--184--8211Chr10:403091..403115 (25 bp)
GGAAGGCATTGTCATGGCATTGCAA
LOC_Os10g01620
OsAffx.6548.1.S1_at--821--7111Chr10:403101..403125 (25 bp)
GTCATGGCATTGCAATGGACACTTT
LOC_Os10g01620
OsAffx.6548.1.S1_at--245--851Chr10:403104..403128 (25 bp)
ATGGCATTGCAATGGACACTTTTGC
LOC_Os10g01620
OsAffx.6548.1.S1_at--598--3671Chr10:403122..403146 (25 bp)
CTTTTGCCAATCATTGTGGAAACAG
LOC_Os10g01620
OsAffx.6548.1.S1_at--559--2131Chr10:403143..403167 (25 bp)
ACAGATTTTTTAGAGCTGGTGCAAC
LOC_Os10g01620
Target Sequence 
TACCAAGAATCCCACAACATTCCTAAAACCTGCATATGGGAAAGACCAAAGGGAAGGCATTGTCATGGCATTGCAATGGA
CACTTTTGCCAATCATTGTGGAAACAGATTTTTTAGAGCTGGTGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis