Browse Element(s) Details


Os.6674.1.S3_a_at

Description gb:AK103627.1
DB_XREF= gi:32988836
TID=Os.6674.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0071K19.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133O13, full insert sequence.
FL= gb:AK109229.1 gb:AK103627.1 gb:AK072495.1 gb:AK064283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0161011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01570Os.46741.1.S1_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01570Os.46741.2.S1_x_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01580NANA10+370435..371193hypothetical protein
LOC_Os10g01590NANA10+374930..376357hypothetical protein
LOC_Os10g01600NANA10+377998..382873retrotransposon protein, putative, unclassified
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein
LOC_Os10g01620OsAffx.6548.1.S1_at11/1110+402846..403198hypothetical protein
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6674.1.S3_a_at--617--8531Chr10:391471..391495 (25 bp)
TGGAGCGCCAGAAGTCATAAACCCT
LOC_Os10g01610
Os.6674.1.S3_a_at--365--1451Chr10:391462..391486 (25 bp)
AGAAGTCATAAACCCTGTCATTGTA
LOC_Os10g01610
Os.6674.1.S3_a_at--1073--2351Chr10:391437..391461 (25 bp)
AAACCAGACAGGCAGCATCGCCATA
LOC_Os10g01610
Os.6674.1.S3_a_at--366--1651Chr10:391400..391424 (25 bp)
AGCCGAAGCGGGTGGATCCTGATCC
LOC_Os10g01610
Os.6674.1.S3_a_at--519--6371Chr10:391386..391410 (25 bp)
GATCCTGATCCTCAGAACGGCTGTT
LOC_Os10g01610
Os.6674.1.S3_a_at--643--9451Chr10:391332..391356 (25 bp)
TCTGTGCCTTTCTCGTTGTTCCATT
LOC_Os10g01610
Os.6674.1.S3_a_at--935--10791Chr10:391317..391341 (25 bp)
TTGTTCCATTTCAACCTTCCCATAT
LOC_Os10g01610
Os.6674.1.S3_a_at--170--6391Chr10:391235..391259 (25 bp)
GATCGCCAACTCCAAGTGCTCAAAA
LOC_Os10g01610
Os.6674.1.S3_a_at--648--2411Chr10:391214..391238 (25 bp)
AAAAAGCTCAGCCTTGCTCAAGGGA
LOC_Os10g01610
Os.6674.1.S3_a_at--836--1171Chr10:391172..391196 (25 bp)
AGTACAACCTGTTCTCTGCAAGGAC
LOC_Os10g01610
Os.6674.1.S3_a_at--777--8551Chr10:391147..391171 (25 bp)
TGGAGTGGAATTTCCCTTCTTCTAG
LOC_Os10g01610
Target Sequence 
TGGAGCGCCAGAAGTCATAAACCCTGTCATTGTAAAACCAGACAGGCAGCATCGCCATACCCTTCCTCCTGAGCCGAAGC
GGGTGGATCCTGATCCTCAGAACGGCTGTTCAGAAGATAACAAGAAGCCGCAAGATGGCTCTGTGCCTTTCTCGTTGTTC
CATTTCAACCTTCCCATATCCTCGCCTGCCCAGGCATCATCTGAAGACGAGGTGAGTGGAGGATGTTTGGCGTCGAGATC
GCCAACTCCAAGTGCTCAAAAAGCTCAGCCTTGCTCAAGGGAGGAGACCAACATAAAGGAGTACAACCTGTTCTCTGCAA
GGACTGGAGTGGAATTTCCCTTCTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6674.1.S3_a_at     

Putative homologies in rice

Putative homologies in arabidopsis