Browse Element(s) Details


Os.52092.1.S1_at

Description gb:AK064700.1
DB_XREF= gi:32974718
TID=Os.52092.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G09, full insert sequence.
FL= gb:AK064700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3971010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39710Os.52092.1.S1_at10/111+22723971..22724975expressed protein
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified
LOC_Os01g39750OsAffx.11394.1.S1_at11/111+22739325..22740053hypothetical protein
LOC_Os01g39750Os.50833.1.S2_at2/111+22739325..22740053hypothetical protein
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52092.1.S1_at--1136--4851Chr01:22724898..22724922 (25 bp)
GCTAGCTTTATATACCAAATCGAAG
LOC_Os01g39710
Os.52092.1.S1_at--56--3491Chr01:22724213..22724676 (25 bp)
CATGGCCGGGAGAGGCAACTAGACA
LOC_Os01g39710
Os.52092.1.S1_at--475--8511Chr01:22724180..22724204 (25 bp)
TGGAAGACGACGAACACCGCTGGCA
LOC_Os01g39710
Os.52092.1.S1_at--628--4711Chr01:22724162..22724186 (25 bp)
GCTGGCACACATGTCCGATGCAGTA
LOC_Os01g39710
Os.52092.1.S1_at--680--9311Chr01:22724132..22724156 (25 bp)
TCGAAATTTTTATCTGCCCCGATAG
LOC_Os01g39710
Os.52092.1.S1_at--490--4531Chr01:22724117..22724141 (25 bp)
GCCCCGATAGAATTTAATTAGCCTT
LOC_Os01g39710
Os.52092.1.S1_at--947--3671Chr01:22724070..22724094 (25 bp)
CTTTCTTTAAACAAGTTGCTGGCAG
LOC_Os01g39710
Os.52092.1.S1_at--856--9111Chr01:22724054..22724078 (25 bp)
TGCTGGCAGATCAGGCTTTAGTTCT
LOC_Os01g39710
Os.52092.1.S1_at--1123--3851Chr01:22724031..22724055 (25 bp)
CTGATAGATAGAGCAACACCAACAT
LOC_Os01g39710
Os.52092.1.S1_at--151--2171Chr01:22724016..22724040 (25 bp)
ACACCAACATGGATCGGCGCTGTTA
LOC_Os01g39710
Os.52092.1.S1_at--828--10731Chr01:22723971..22723995 (25 bp)
TTGCATCGTGGACTCAATACATATT
NONE
Target Sequence 
GCTAGCTTTATATACCAAATCGAAGAAGAAGAAGATAATGTCCGGCTACGGGCAGCAGCCGACGGGCGATCGTCTTGAGT
CGGCGACGTTGGTGCAGTCCATGGAGTCGACCAAGGATACGATCGTCCGGCGCATCACCGAGTCGGCGGCCACCGTCGAC
AGCGCCGACGTGCAGGCGGCCGCGGCCAAGCTGACGGCGGCTGTGGAGTACAGGTTCGACGTTGCCAAAGCTGACGTTGA
TCGGATCATGGCCGGGAGAGGCAACTAGACAAGTGATCGTGGAAGACGACGAACACCGCTGGCACACATGTCCGATGCAG
TACAAGATCGAAATTTTTATCTGCCCCGATAGAATTTAATTAGCCTTTTTCTTTGTTTTTCTCTTGTAACTTTCTTTAAA
CAAGTTGCTGGCAGATCAGGCTTTAGTTCTGATAGATAGAGCAACACCAACATGGATCGGCGCTGTTATGAAAAAGCAAT
AAAATTAATTGCATCGTGGACTCAATACATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis