Browse Element(s) Details


OsAffx.11394.1.S1_at

Description tigr:9629.m03788
TID=OsAffx.11394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3975011/11hypothetical protein
LOC_Os12g365802/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g163701/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39710Os.52092.1.S1_at10/111+22723971..22724975expressed protein
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified
LOC_Os01g39750OsAffx.11394.1.S1_at11/111+22739325..22740053hypothetical protein
LOC_Os01g39750Os.50833.1.S2_at2/111+22739325..22740053hypothetical protein
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11394.1.S1_at--228--1231Chr01:22739374..22739398 (25 bp)
AGTTCCAATACATCATTGACACTCT
LOC_Os01g39750
OsAffx.11394.1.S1_at--1052--2071Chr01:22739383..22739407 (25 bp)
ACATCATTGACACTCTCAATAAGGC
LOC_Os01g39750
OsAffx.11394.1.S1_at--189--2932Chr01:22739403..22739554 (25 bp)
AAGGCACTTGTGAGATTTTCATGGA
LOC_Os01g39750
OsAffx.11394.1.S1_at--676--151Chr01:22739571..22739595 (25 bp)
ATTATGGATGCCGATGTTCGCCATC
LOC_Os01g39750
OsAffx.11394.1.S1_at--151--6691Chr01:22739586..22739610 (25 bp)
GTTCGCCATCCTCTTAAGACGTAAA
LOC_Os01g39750
OsAffx.11394.1.S1_at--1119--9211Chr01:22739594..22739618 (25 bp)
TCCTCTTAAGACGTAAATCCAAATT
LOC_Os01g39750
OsAffx.11394.1.S1_at--47--9211Chr01:22739611..22739635 (25 bp)
TCCAAATTTCTAAACACACAATACG
LOC_Os01g39750
OsAffx.11394.1.S1_at--603--2191Chr01:22739626..22739650 (25 bp)
ACACAATACGTTTTCACATCTTCAA
LOC_Os01g39750
OsAffx.11394.1.S1_at--816--9912Chr12:22363401..22363425 (25 bp)
TACGTTTTCACATCTTCAATCCTTC
LOC_Os12g36580
OsAffx.11394.1.S1_at--666--2092Chr12:22363410..22363433 (24 bp)
ACATCTTCAATCCTTCCATTTGCAA
LOC_Os12g36580
OsAffx.11394.1.S1_at--616--3651Chr01:22739645..22739669 (25 bp)
CTTCAATCCTTCCATTTGCAAAAAT
LOC_Os01g39750
Target Sequence 
AGTTCCAATACATCATTGACACTCTCAATAAGGCACTTGTGAGATTTTCATGGATGACAACAACTGGAACATTATGGATG
CCGATGTTCGCCATCCTCTTAAGACGTAAATCCAAATTTCTAAACACACAATACGTTTTCACATCTTCAATCCTTCCATT
TGCAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis