Browse Element(s) Details


Os.57332.1.S1_at

Description gb:AK111319.1
DB_XREF= gi:32996528
TID=Os.57332.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C12, full insert sequence.
FL= gb:AK111319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3978010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified
LOC_Os01g39750OsAffx.11394.1.S1_at11/111+22739325..22740053hypothetical protein
LOC_Os01g39750Os.50833.1.S2_at2/111+22739325..22740053hypothetical protein
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57332.1.S1_at--556--9611NONE
TCATCGGAGTTTACGTATTTGCAAA
NONE
Os.57332.1.S1_at--858--4891Chr01:22764871..22764895 (25 bp)
GCTTCCACCAATACCCGAAGACGAA
LOC_Os01g39780
Os.57332.1.S1_at--649--5351Chr01:22764934..22764958 (25 bp)
GAAGATCAAGCCACGCAATGCTGCT
LOC_Os01g39780
Os.57332.1.S1_at--1143--9511Chr01:22765016..22765040 (25 bp)
TCTCTTCCCCGTTTGTGATTAGCAT
LOC_Os01g39780
Os.57332.1.S1_at--1016--10371Chr01:22765078..22765102 (25 bp)
TTTTGCCTGCTGTTCCATGGAAGGA
LOC_Os01g39780
Os.57332.1.S1_at--74--5191Chr01:22765097..22765121 (25 bp)
GAAGGACATGTTCTGGATTTTACAC
LOC_Os01g39780
Os.57332.1.S1_at--1107--9851Chr01:22765117..22765141 (25 bp)
TACACTTGTCTCTTGTTTGTTGGCA
LOC_Os01g39780
Os.57332.1.S1_at--393--1931Chr01:22765145..22765169 (25 bp)
ACGGTAGCATTTTGTATGGTGTCAA
LOC_Os01g39780
Os.57332.1.S1_at--835--2431Chr01:22765187..22765211 (25 bp)
AAAATACTGAGTCAAGTGGCTCCAG
LOC_Os01g39780
Os.57332.1.S1_at--766--1091Chr01:22765201..22765225 (25 bp)
AGTGGCTCCAGTTTCAGGGAACTCT
LOC_Os01g39780
Os.57332.1.S1_at--72--9651Chr01:22765214..22765238 (25 bp)
TCAGGGAACTCTGGCATTTTAACAT
LOC_Os01g39780
Target Sequence 
TCATCGGAGTTTACGTATTTGCAAAGACCTACAAGAGAGACCAGGAAAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCT
GCAGTTGTAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTACTCCTCCAACTCCTCCACCCAAAAG
AGTGCTTCCACCAATACCCGAAGACGAACANCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCAC
GCAATGCTGCTGAGAAGAACAAGATCAACGAAGAGAAGGNGCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTTCCCCGT
TTGTGATTAGCATNTCACTGGCTGCCCTGCTGGCCTTGTTTTTTTTTTTCTTTTGCCTGCTGTTCCATGGAAGGACATGT
TCTGGATTTTACACTTGTCTCTTGTTTGTTGGCAGAAACGGTAGCATTTTGTATGGTGTCAAGTAATCATTTGTTACCCA
AAATACTGAGTCAAGTGGCTCCAGTTTCAGGGAACTCTGGCATTTTAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis