Browse Element(s) Details


Os.9190.1.S1_at

Description gb:AK065133.1
DB_XREF= gi:32975151
TID=Os.9190.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013G02.24 (P0013G02.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P21, full insert sequence.
FL= gb:AK065133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3979011/11Esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9190.1.S1_at--375--8171Chr01:22766650..22766674 (25 bp)
GGAACGATTGACCACTGATATGCAT
LOC_Os01g39790
Os.9190.1.S1_at--1056--9831Chr01:22766626..22766650 (25 bp)
TAAAGCATGCCTTTCCATCAGCAAA
LOC_Os01g39790
Os.9190.1.S1_at--691--5351Chr01:22766361..22766385 (25 bp)
GAAGATGCATACGAATTCGCGAAGC
LOC_Os01g39790
Os.9190.1.S1_at--430--5431Chr01:22766329..22766353 (25 bp)
GAACCACAAGCTACATGTCATCGAG
LOC_Os01g39790
Os.9190.1.S1_at--112--771Chr01:22766315..22766339 (25 bp)
ATGTCATCGAGGGAGCAAATCACTG
LOC_Os01g39790
Os.9190.1.S1_at--682--1951Chr01:22766294..22766318 (25 bp)
ACTGCTACACTGCTCACCGTAAAGA
LOC_Os01g39790
Os.9190.1.S1_at--331--1371Chr01:22766272..22766296 (25 bp)
AGAGCTTTCTGATGCCGTGGTGGAT
LOC_Os01g39790
Os.9190.1.S1_at--1142--571Chr01:22766261..22766285 (25 bp)
ATGCCGTGGTGGATTTCATTACATC
LOC_Os01g39790
Os.9190.1.S1_at--67--7671Chr01:22766106..22766130 (25 bp)
GGGATAACTCGTCGGCATAAGATGA
LOC_Os01g39790
Os.9190.1.S1_at--517--6251Chr01:22766071..22766095 (25 bp)
GATGGGTTGTTTCTGTACACTTATA
LOC_Os01g39790
Os.9190.1.S1_at--505--8791Chr01:22766031..22766055 (25 bp)
TGTTGAAGTTGCCATATTATCCCCA
LOC_Os01g39790
Target Sequence 
GGAACGATTGACCACTGATATGCATAAAGCATGCCTTTCCATCAGCAAAGAATGCAGGTTTTTCACAGTTCACGGTTCAG
CCNATGAGATCATTCCTGTGGAAGATGCATACGAATTCGCGAAGCATATACCGAACCACAAGCTACATGTCATCGAGGGA
GCAAATCACTGCTACACTGCTCACCGTAAAGAGCTTTCTGATGCCGTGGTGGATTTCATTACATCCAGTGAGGATGGGGA
TAACTCGTCGGCATAAGATGAATTGAGTTGTGATGGGTTGTTTCTGTACACTTATAGACCATTTATAAGCTTGTTGAAGT
TGCCATATTATCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis