Browse Element(s) Details


Os.27016.2.S1_at

Description gb:AK069131.1
DB_XREF= gi:32979155
TID=Os.27016.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycolipid alpha-mannosyltransferase (P0013G02.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007E04, full insert sequence.
FL= gb:AK069131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3981011/11mannosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006505biological_processGPI anchor metabolism
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0000030molecular_functionmannosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27016.2.S1_at--465--10511Chr01:22782528..22782552 (25 bp)
TTCACCGTTAGCACTCTCAATCAAT
LOC_Os01g39810
Os.27016.2.S1_at--527--9731Chr01:22782544..22782568 (25 bp)
TCAATCAATTGTTCACGCCAGGTGC
LOC_Os01g39810
Os.27016.2.S1_at--147--4432Chr02:627953..627977 (25 bp)
GCCAGGTGCTTCTTATTGCTTTTAA
NONE
Os.27016.2.S1_at--470--1571Chr01:22782591..22782615 (25 bp)
AGCTACTTCTGTCGTCAATGTCCGT
LOC_Os01g39810
Os.27016.2.S1_at--909--51Chr01:22782710..22782734 (25 bp)
ATTGAAGCCTGTTCTCTTTCAGTGC
LOC_Os01g39810
Os.27016.2.S1_at--649--5171Chr01:22782753..22782777 (25 bp)
GCAAGGCTTTTGTTTTCATCAGCAC
LOC_Os01g39810
Os.27016.2.S1_at--90--91Chr01:22782789..22782813 (25 bp)
ATTGCCGTCTTTCCTGTAATTAGCT
LOC_Os01g39810
Os.27016.2.S1_at--298--9991Chr01:22782857..22782881 (25 bp)
TAGCTGGCGCTCTTGTAACTTTTTA
LOC_Os01g39810
Os.27016.2.S1_at--121--6871Chr01:22782883..22782907 (25 bp)
GTATTCTGGGTCTAGGTAGCCTGGA
LOC_Os01g39810
Os.27016.2.S1_at--241--1151Chr01:22782907..22782931 (25 bp)
AGTCCCCTGTACCATTTTCATAAAT
LOC_Os01g39810
Os.27016.2.S1_at--953--7091Chr01:22782974..22782998 (25 bp)
GTCACTTTTGCTATGTACTTGTCAC
LOC_Os01g39810
Target Sequence 
TTCACCGTTAGCACTCTCAATCAATTGTTCACGCCAGGTGCTTCTTATTGCTTTTAACCTTTCAGCTACTTCTGTCGTCA
ATGTCCGTTCTCCCCCCGTTGTACTCAAGCAACATTTTGCCAGTTGAGCAACATCTTGGAACAGCTCTGTTCCAACACCT
AATATGTTCTTGTCCAAGATAGATTGAAGCCTGTTCTCTTTCAGTGCCAGAAGGAAAAGGATGATGCAAGGCTTTTGTTT
TCATCAGCACTGTCAGAATAAATTGCCGTCTTTCCTGTAATTAGCTCTAGAATCACAACTCCAAAACTATAAACATCACT
TTTCTCTGTTAGCTGGCGCTCTTGTAACTTTTTAAGTATTCTGGGTCTAGGTAGCCTGGAGTCCCCTGTACCATTTTCAT
AAATTGTATTTCATCTTTTGGAAGCATCCTTGATGCTCCAAAATCAGTCACTTTTGCTATGTACTTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27016.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis