Browse Element(s) Details


Os.27016.1.S2_x_at

Description gb:AK103451.1
DB_XREF= gi:32988660
TID=Os.27016.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycolipid alpha-mannosyltransferase (P0013G02.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129I08, full insert sequence.
FL= gb:AK064181.1 gb:AK103451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3981010/11mannosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006505biological_processGPI anchor metabolism
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0000030molecular_functionmannosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27016.1.S2_x_at--128--751Chr01:22781810..22781834 (25 bp)
ATGTATTAGCGCCAACTTCCATGTT
LOC_Os01g39810
Os.27016.1.S2_x_at--812--5931Chr01:22781912..22781936 (25 bp)
GAGCAGAGCTCCTCTTCTAGAGAAA
LOC_Os01g39810
Os.27016.1.S2_x_at--205--9571Chr01:22781924..22781948 (25 bp)
TCTTCTAGAGAAACTGGCGCCATCC
LOC_Os01g39810
Os.27016.1.S2_x_at--514--951Chr01:22781962..22781986 (25 bp)
AGGAACAAGTTCCATTCCATCCATC
LOC_Os01g39810
Os.27016.1.S2_x_at--321--7512Chr01:22782030..22782054 (25 bp)
GTGGTTGTTTTCCAGGAACTCTTCA
LOC_Os01g39810
Os.27016.1.S2_x_at--802--8171NONE
GGAACTCTTCATAGTCTGCAACAGT
NONE
Os.27016.1.S2_x_at--148--5331Chr01:22782122..22782146 (25 bp)
GAAGTCATCCACTTCCAGTATTGAA
LOC_Os01g39810
Os.27016.1.S2_x_at--705--1131Chr01:22782146..22782170 (25 bp)
AGTGCCAACTATGTCTTTCTCTGAA
LOC_Os01g39810
Os.27016.1.S2_x_at--456--7631Chr01:22782218..22782242 (25 bp)
GGGACAGATCATTCCATGGCAAATC
LOC_Os01g39810
Os.27016.1.S2_x_at--664--10811Chr01:22782244..22782268 (25 bp)
TTGTGCGGACATACTGAACCTCATA
LOC_Os01g39810
Os.27016.1.S2_x_at--271--7071Chr01:22782305..22782329 (25 bp)
GTAAGTTCTCATTGATTTCCTGTAG
LOC_Os01g39810
Target Sequence 
ATGTATTAGCGCCAACTTCCATGTTTTCACAAAAAAAAAATCATTTCCATAACTAGAGGTGTGAAGAAGTTTTAGAGGTT
TAACAAAACGAAGACAAGAGACGAGCAGAGCTCCTCTTCTAGAGAAACTGGCGCCATCCCAACCAGCTCTTCAGGAACAA
GTTCCATTCCATCCATCTCAACCAAGTTTCAAAAGTGAGCAAGTAACAAAGAGGCAAAAGGTGGTTGTTTTCCAGGAACT
CTTCATAGTCTGCAACAGTCCAACTCTCCATCTTGACCTCCCAGCATCTTTCCAATCTTCCTCTGCATCACTGAAGTCAT
CCACTTCCAGTATTGAAGTGCCAACTATGTCTTTCTCTGAAGATCTTCCATGGTGAAAGTAGGACAAACCATCAGGCAAA
ACAAAAAGGGGACAGATCATTCCATGGCAAATCTTTGTGCGGACATACTGAACCTCATAAAATCATGTCAAATGTAAGTT
AAAATCATGTCAAATGTAAGTTCTCATTGATTTCCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27016.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis