Browse Element(s) Details


Os.9781.1.S1_x_at

Description gb:AK121186.1
DB_XREF= gi:37990809
TID=Os.9781.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013G02.26 (P0013G02.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085B15, full insert sequence.
FL= gb:AK121186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3980010/11Esterase, putative, expressed
LOC_Os03g559701/11ResB-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0017004biological_processcytochrome complex assembly
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9781.1.S1_x_at--639--6231Chr01:22773906..22773930 (25 bp)
GATGGAGCGGCTCAACACCGATATA
LOC_Os01g39800
Os.9781.1.S1_x_at--1057--10551Chr01:22773644..22773668 (25 bp)
TTCTTCACAGTTCACGGTTCAGCAG
LOC_Os01g39800
Os.9781.1.S1_x_at--623--5691Chr01:22773615..22773639 (25 bp)
GACTATACCTGTGGAAGACGCCTAT
LOC_Os01g39800
Os.9781.1.S1_x_at--327--5811Chr01:22773599..22773623 (25 bp)
GACGCCTATAAGTTTGCGAAGCATA
LOC_Os01g39800
Os.9781.1.S1_x_at--122--2091Chr01:22773407..22773506 (25 bp)
ACATCTAATTAGTTCTGCATGTCTG
LOC_Os01g39800
Os.9781.1.S1_x_at--1145--9131Chr01:22773304..22773328 (25 bp)
TGCCTTTTCTCCTCTAAACAGGTAT
LOC_Os01g39800
Os.9781.1.S1_x_at--1000--6971Chr01:22773226..22773250 (25 bp)
GTACCATTTCGTAGGTCCATATTGA
LOC_Os01g39800
Os.9781.1.S1_x_at--41--5212Chr03:31801200..31801348 (24 bp)
GAATTGTTTCTTGCAGATGTCTGTG
LOC_Os03g55970
Os.9781.1.S1_x_at--1001--7171Chr01:22773172..22773196 (25 bp)
GTCTGTGTACCTACAGGATTCCTGT
LOC_Os01g39800
Os.9781.1.S1_x_at--480--5211Chr01:22773090..22773114 (25 bp)
GAATTCTGCGTGCAAAAGGTTTCAG
LOC_Os01g39800
Os.9781.1.S1_x_at--691--7871Chr01:22773073..22773097 (25 bp)
GGTTTCAGAGCACAACTGCTGCTGC
NONE
Target Sequence 
GATGGAGCGGCTCAACACCGATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCANGTTCTTCACAGTTCACGGTT
CAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACNAGCTGCANGTTATTGAG
GGAGCAAATCNTAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTNGTGGATTTCATCACATCTAATTAGTTCTG
CATGTCTGAGANACTGANACAACCTCATTCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTANGTTTTGTGCCA
TTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCANAAAGCANGTGTNTCCGTGTATAT
TANTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCC
TGTNAATATCNAACTCTATANTANAACCGTNTAAAATTTCNGGNTNTTTACTTTGTNCTAAGAATTCTGCGTGCAAAAGG
TTTCAGAGCACAACTGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9781.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis