Browse Element(s) Details


Os.18562.1.S1_at

Description gb:AK103045.1
DB_XREF= gi:32988254
TID=Os.18562.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-galactosidase (P0672C09.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117F22, full insert sequence.
FL= gb:AK103045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3983011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g39860Os.37617.1.S1_at11/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39860OsAffx.17306.1.S1_x_at2/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39870OsAffx.23588.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_x_at2/111+22818763..22819164hypothetical protein
LOC_Os01g39880OsAffx.23588.1.S1_at7/111+22820074..22820374hypothetical protein
LOC_Os01g39890OsAffx.23589.1.S1_s_at11/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39890Os.55243.1.S1_at1/111+22821313..22824000submergence induced protein SI397, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18562.1.S1_at--1099--9251Chr01:22798847..22798871 (25 bp)
TCCTCCCAAATCATCCTATATCTTA
LOC_Os01g39830
Os.18562.1.S1_at--464--3691Chr01:22798862..22798886 (25 bp)
CTATATCTTAGTTTCGACACGGTTT
LOC_Os01g39830
Os.18562.1.S1_at--12--8291Chr01:22798889..22798913 (25 bp)
GGCTTACCGACCTTCTGGCAAGAGG
LOC_Os01g39830
Os.18562.1.S1_at--861--1251Chr01:22799027..22799051 (25 bp)
AGATTCAGGACTCTGCAGTGCAGGA
LOC_Os01g39830
Os.18562.1.S1_at--795--8331Chr01:22799066..22799090 (25 bp)
GGCTGTATGTATGGTCCTCTGGACA
LOC_Os01g39830
Os.18562.1.S1_at--496--7571Chr01:22799113..22799137 (25 bp)
GGGCGCATAGGAGACTCTGCTGATA
LOC_Os01g39830
Os.18562.1.S1_at--112--4751Chr01:22799131..22799155 (25 bp)
GCTGATACATGAGTCCATATGCGCA
LOC_Os01g39830
Os.18562.1.S1_at--864--4711Chr01:22799250..22799274 (25 bp)
GCTGGTAATGTGCAGGGTCCATCAT
LOC_Os01g39830
Os.18562.1.S1_at--527--5191Chr01:22799310..22799334 (25 bp)
GCAATGTACTACCTTTTCAGCTTAT
LOC_Os01g39830
Os.18562.1.S1_at--1031--2251Chr01:22799339..22799363 (25 bp)
AAATCTGCTGTATGTTATTCAACCG
LOC_Os01g39830
Os.18562.1.S1_at--733--5211Chr01:22799373..22799397 (25 bp)
GAATTCTCTCAGGTGGTCATCTCAA
LOC_Os01g39830
Target Sequence 
TCCTCCCAAATCATCCTATATCTTAGTTTCGACACGGTTTTCGGCTTACCGACCTTCTGGCAAGAGGTGAAAGTCACAGC
AACNAGTGACNGCACGGNCCGTCAGAAGTTACAGAAAATTTAGTTGTAATTGAAGCATCAGTGTATGTACATTATTCTAC
ATAGAAATTCACTGGGAAGGAAAGATTCAGGACTCTGCAGTGCAGGAATGGGAAACCAAGGGGCTGTATGTATGGTCCTC
TGGACAGTATTGGTTTTTGGCTGGGGAAGGGCGCATAGGAGACTCTGCTGATACATGAGTCCATATGCGCAATGGCTTTT
GCATATTGGATTGGAGGATCAACTCTGTTTCATACGTGATGTGATGATTCATTTTTAAGCTCACTGAAAACTACTGCAAT
GTAATGCTGGTAATGTGCAGGGTCCATCATTGATGTATTAAATTGTCCTCTTAATTAGCTAATTAGCAATGTACTACCTT
TTCAGCTTATAAATAAATCTGCTGTATGTTATTCAACCGTATGTGAATGAATTCTCTCAGGTGGTCATCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis