Browse Element(s) Details


Os.36418.1.S1_at

Description gb:AK063468.1
DB_XREF= gi:32973486
TID=Os.36418.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672C09.18 (P0672C09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-A02, full insert sequence.
FL= gb:AK063468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3984011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g39860Os.37617.1.S1_at11/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39860OsAffx.17306.1.S1_x_at2/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39870OsAffx.23588.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_x_at2/111+22818763..22819164hypothetical protein
LOC_Os01g39880OsAffx.23588.1.S1_at7/111+22820074..22820374hypothetical protein
LOC_Os01g39890OsAffx.23589.1.S1_s_at11/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39890Os.55243.1.S1_at1/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39900NANA1+22825705..22827308retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36418.1.S1_at--210--1611Chr01:22800106..22800130 (25 bp)
AGCTGCTCAGCTTGGTAGCTCCTAG
LOC_Os01g39840
Os.36418.1.S1_at--141--4771Chr01:22799938..22800074 (25 bp)
GCTGCAGGCAGTAGGCACTTAGGCA
LOC_Os01g39840
Os.36418.1.S1_at--741--10111Chr01:22799865..22799889 (25 bp)
TATGGGCATACTTTCTTTATTGAGC
LOC_Os01g39840
Os.36418.1.S1_at--964--3191Chr01:22799841..22799865 (25 bp)
CAAGGTCCCTAATTCAGATTCTGCA
LOC_Os01g39840
Os.36418.1.S1_at--848--1251Chr01:22799826..22799850 (25 bp)
AGATTCTGCATCTCCTAGGACAGGG
LOC_Os01g39840
Os.36418.1.S1_at--494--10091Chr01:22799811..22799835 (25 bp)
TAGGACAGGGCTTCACATTTCTCAT
LOC_Os01g39840
Os.36418.1.S1_at--972--3171Chr01:22799731..22799755 (25 bp)
CAATTGGTGTTGTTTTCTTCTTCTT
LOC_Os01g39840
Os.36418.1.S1_at--880--3631Chr01:22799715..22799739 (25 bp)
CTTCTTCTTCAATCCCAACAGAGGA
LOC_Os01g39840
Os.36418.1.S1_at--1116--1311Chr01:22799696..22799720 (25 bp)
AGAGGAATCACCACACGCTCAGGCT
LOC_Os01g39840
Os.36418.1.S1_at--342--6951Chr01:22799607..22799631 (25 bp)
GTAGAGCATCAAATTCAACTTCAAG
LOC_Os01g39840
Os.36418.1.S1_at--666--3151Chr01:22799570..22799594 (25 bp)
AATTCGGAGTGAGGAGCCCCAAAAT
LOC_Os01g39840
Target Sequence 
AGCTGCTCAGCTTGGTAGCTCCTAGTCCTCAGCTCAGTCGCTCAGCAGTCCATCCAGCTGCAGGCAGTAGGCACTTAGGC
AGAGGTCAAGTTGAATTAATTTGTCAGATATAAAAAGGAACAACAGAAATATGGGCATACTTTCTTTATTGAGCAAGGTC
CCTAATTCAGATTCTGCATCTCCTAGGACAGGGCTTCACATTTCTCATGGGGTAACTATAGGAAGGAAGAGTAACTGAAG
AAACTCGAGAAAATGAGACTTTGCAATTGGTGTTGTTTTCTTCTTCTTCAATCCCAACAGAGGAATCACCACACGCTCAG
GCTTCACCAACACCACCACCAGTACAGCCCCAAAATGAAGAGCAAGAAGATATAACTGTAGGTAGTGGTAGAGCATCAAA
TTCAACTTCAAGAGCATCTAATTCAATTCGGAGTGAGGAGCCCCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis