Browse Element(s) Details


OsAffx.23588.1.S1_at

Description gb:NM_193000.1
DB_XREF= gi:34913083
GEN=P0672C09.23
TID=OsAffx.23588.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0672C09.23 (P0672C09.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g398807/11hypothetical protein
LOC_Os01g398703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g39860Os.37617.1.S1_at11/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39860OsAffx.17306.1.S1_x_at2/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39870OsAffx.23588.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_x_at2/111+22818763..22819164hypothetical protein
LOC_Os01g39880OsAffx.23588.1.S1_at7/111+22820074..22820374hypothetical protein
LOC_Os01g39890OsAffx.23589.1.S1_s_at11/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39890Os.55243.1.S1_at1/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39900NANA1+22825705..22827308retrotransposon protein, putative, unclassified, expressed
LOC_Os01g39910NANA1+22832142..22832405hypothetical protein
LOC_Os01g39920Os.45173.5.S1_x_at4/111+22839067..22839867retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39930NANA1+22840133..22844500retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23588.1.S1_at--389--2851Chr01:22820289..22820313 (25 bp)
AAGTCGACACGGTGGTAGGAATAGT
LOC_Os01g39880
OsAffx.23588.1.S1_at--417--2651Chr01:22820246..22820270 (25 bp)
AACCACAGTTGGTTGGCGTGGCACA
LOC_Os01g39880
OsAffx.23588.1.S1_at--1064--2131Chr01:22820224..22820248 (25 bp)
ACAGTTGATGGTGGCTTCTATTTTC
LOC_Os01g39880
OsAffx.23588.1.S1_at--264--10551Chr01:22820209..22820233 (25 bp)
TTCTATTTTCAACAGGCGACCTCGA
LOC_Os01g39880
OsAffx.23588.1.S1_at--231--8391Chr01:22820195..22820219 (25 bp)
GGCGACCTCGACACATAGGGTAGAT
LOC_Os01g39880
OsAffx.23588.1.S1_at--229--1271Chr01:22820170..22820194 (25 bp)
AGATATGGGCGAGAGCCGAGCCTCT
LOC_Os01g39880
OsAffx.23588.1.S1_at--1068--2951Chr01:22820135..22820159 (25 bp)
AATGGCGACGCTTGTAGCCGCGGCT
LOC_Os01g39880
OsAffx.23588.1.S1_at--72--8311NONE
GGCTTTCCCCTCGAGAACGCAAGAA
NONE
OsAffx.23588.1.S1_at--1038--8531Chr01:22818932..22818956 (25 bp)
TGGAGCGGCTCAATCTCGGAGCTGC
LOC_Os01g39870
OsAffx.23588.1.S1_at--1072--5893Chr08:17005504..17005524 (21 bp)
GAGCTGCCGCTCTTCACGCTGGTGG
NONE
OsAffx.23588.1.S1_at--659--10491Chr01:22818902..22818926 (25 bp)
TTCACGCTGGTGGTGCTCCCGAAGT
LOC_Os01g39870
Target Sequence 
AAGTCGACACGGTGGTAGGAATAGTGCAGCGCGGGCGACGGCCAACCACAGTTGGTTGGCGTGGCACAGTTGATGGTGGC
TTCTATTTTCAACAGGCGACCTCGACACATAGGGTAGATAGATATGGGCGAGAGCCGAGCCTCTTCAGGTNAGCAATGGC
GACGCTTGTAGCCGCGGCTTTCCCCTCGAGAACGCAAGAACACAGCAAGAGAGGAGGAGATTCAAGAACCGGAGGAATTG
ATGTCATCTTCGGCTGTGATTCCGCCGCCGTCGCCGGAGAGGAGGGTGCCGATGGTGGCCGACAACGGAGGTGGAGAAGG
CGTCGGCGGAGCACGCGGCGGAGATGGAGCGGCTCAATCTCGGAGCTGCCGCTCTTCACGCTGGTGGTGCTCCCGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis